miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 111775 0.67 0.910087
Target:  5'- gCGCCGGCGaGcuccacgcGUCCGUCGACGGc--- -3'
miRNA:   3'- -GCGGCCGC-Ca-------UAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 113935 0.71 0.726049
Target:  5'- uCGCCGGauGagcUCgGCCGACGAGCAg -3'
miRNA:   3'- -GCGGCCgcCau-AGgCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 115080 0.68 0.848834
Target:  5'- gGCCGGCGGcg-CCGaCUGAUGAugAUc -3'
miRNA:   3'- gCGGCCGCCauaGGC-GGCUGUUugUA- -5'
15967 3' -56.7 NC_004065.1 + 117171 0.71 0.697021
Target:  5'- gCGCCGaCGGgGUCCGCCccuggGGCAGGCGUu -3'
miRNA:   3'- -GCGGCcGCCaUAGGCGG-----CUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 118225 0.74 0.558829
Target:  5'- aGaCCGGCGGUcaucggagCCGUCGACGGACGc -3'
miRNA:   3'- gC-GGCCGCCAua------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 118325 0.73 0.637799
Target:  5'- uCGCCaGCGGga-CCGCCGACGucCAUg -3'
miRNA:   3'- -GCGGcCGCCauaGGCGGCUGUuuGUA- -5'
15967 3' -56.7 NC_004065.1 + 119465 0.68 0.878129
Target:  5'- aCGCCuGGCGGa--CCGCCGA--AGCGUc -3'
miRNA:   3'- -GCGG-CCGCCauaGGCGGCUguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 119611 0.71 0.722214
Target:  5'- aCGCCGGCGGcggaggagacgCCGUCGGCcguGGCGUg -3'
miRNA:   3'- -GCGGCCGCCaua--------GGCGGCUGu--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 120162 0.69 0.841034
Target:  5'- aCGCCGGUGGca-CCGCcCGGCAccuGCGc -3'
miRNA:   3'- -GCGGCCGCCauaGGCG-GCUGUu--UGUa -5'
15967 3' -56.7 NC_004065.1 + 120553 0.71 0.697021
Target:  5'- uGCCGGCGGcgGUCgGCgCGAgCGGGCGg -3'
miRNA:   3'- gCGGCCGCCa-UAGgCG-GCU-GUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 121778 0.72 0.657638
Target:  5'- gGUCGGaCGGaAagCGCCGACGAGCGUa -3'
miRNA:   3'- gCGGCC-GCCaUagGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 122235 0.66 0.935089
Target:  5'- gGCCGGCGGgucguuccUGUCgccgcugcugcccgCGCCGACAccgaccuggGGCAUc -3'
miRNA:   3'- gCGGCCGCC--------AUAG--------------GCGGCUGU---------UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 122500 0.66 0.945518
Target:  5'- aGCUgGGCGGUcgCCGCgCGcaccuccucguGCGAGCGg -3'
miRNA:   3'- gCGG-CCGCCAuaGGCG-GC-----------UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 124648 0.67 0.921332
Target:  5'- uCGCCGGCcGUcagcgaguccggGUCCGCCGuCAGGa-- -3'
miRNA:   3'- -GCGGCCGcCA------------UAGGCGGCuGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 124735 0.67 0.921332
Target:  5'- gCGCCGcacgcGUGGUGUUCaGCaCGGCGGGCAc -3'
miRNA:   3'- -GCGGC-----CGCCAUAGG-CG-GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 127613 0.68 0.871102
Target:  5'- gCGCCGGCuccucccGUCCGUCGACGAGg-- -3'
miRNA:   3'- -GCGGCCGcca----UAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 132522 0.67 0.90413
Target:  5'- uCGUCGG-GGUgAUCCGCCG-CAGAUc- -3'
miRNA:   3'- -GCGGCCgCCA-UAGGCGGCuGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 138155 0.7 0.781821
Target:  5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3'
miRNA:   3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 139915 0.66 0.936516
Target:  5'- gGCCGGCGGcgccagcggguUGaacuucgucUCCGUCGACAGGa-- -3'
miRNA:   3'- gCGGCCGCC-----------AU---------AGGCGGCUGUUUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.