miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 229154 0.68 0.884948
Target:  5'- uGCCGGCGGggcgcccUCGCCcGGCAGuCAUg -3'
miRNA:   3'- gCGGCCGCCaua----GGCGG-CUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 210843 0.68 0.871102
Target:  5'- gGCCGGaGGUGUcCCGCCucGGCAGAa-- -3'
miRNA:   3'- gCGGCCgCCAUA-GGCGG--CUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 210590 0.68 0.878129
Target:  5'- uCGCCagcagcGCGGUGccuccggcaccUCCGCCGACGccGGCGg -3'
miRNA:   3'- -GCGGc-----CGCCAU-----------AGGCGGCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 210090 0.66 0.936516
Target:  5'- uGCCGaCGGUGUCCGUCG-UAAcCAc -3'
miRNA:   3'- gCGGCcGCCAUAGGCGGCuGUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 208191 0.69 0.816587
Target:  5'- aGCC-GCGGUAUCCcCCgGGCGGGCGa -3'
miRNA:   3'- gCGGcCGCCAUAGGcGG-CUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 208023 0.67 0.890906
Target:  5'- uGCCGGCGGcgAUgaCCGUCGGCGuggccguGGCGg -3'
miRNA:   3'- gCGGCCGCCa-UA--GGCGGCUGU-------UUGUa -5'
15967 3' -56.7 NC_004065.1 + 207435 0.7 0.781821
Target:  5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3'
miRNA:   3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 203511 0.76 0.44673
Target:  5'- uGCCGGCGGgGUCCGUCGcguGACAUg -3'
miRNA:   3'- gCGGCCGCCaUAGGCGGCuguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 203152 0.74 0.543302
Target:  5'- gGCCGGCGGUGgaagauugcuuuuccUCCGCCGAUu----- -3'
miRNA:   3'- gCGGCCGCCAU---------------AGGCGGCUGuuugua -5'
15967 3' -56.7 NC_004065.1 + 201380 0.66 0.926619
Target:  5'- uCGCCGGgGGgugccaCGUCGACGcACAg -3'
miRNA:   3'- -GCGGCCgCCauag--GCGGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 199252 0.68 0.85645
Target:  5'- uCGUCGGCGuccgcGUCCGCCGACcucggauuccgaGGGCAg -3'
miRNA:   3'- -GCGGCCGCca---UAGGCGGCUG------------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 197475 0.73 0.608027
Target:  5'- uGUCGGCGG-AUaCCGCCGGCGcGACGg -3'
miRNA:   3'- gCGGCCGCCaUA-GGCGGCUGU-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 196547 0.67 0.915822
Target:  5'- uGCCGGCGcGUAggcgCCcacgGCCG-CGAACGc -3'
miRNA:   3'- gCGGCCGC-CAUa---GG----CGGCuGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 195118 0.78 0.35587
Target:  5'- uCGCCGGCGGUGUC-GCCGcagcACAGAUAc -3'
miRNA:   3'- -GCGGCCGCCAUAGgCGGC----UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 177490 0.7 0.799489
Target:  5'- gCGCaCGGCGGgg-CCGCCGGgGGuCAg -3'
miRNA:   3'- -GCG-GCCGCCauaGGCGGCUgUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 176103 0.67 0.90413
Target:  5'- cCGCCGcaaGCGGUAUCC--UGACGGGCGc -3'
miRNA:   3'- -GCGGC---CGCCAUAGGcgGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 174630 0.68 0.863874
Target:  5'- gGCCGGUcuucUGUCCGCuCGGCAGAgGUg -3'
miRNA:   3'- gCGGCCGcc--AUAGGCG-GCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 172696 0.73 0.637799
Target:  5'- aGCC-GCGGUcgUCGCCGGCAAuCGUa -3'
miRNA:   3'- gCGGcCGCCAuaGGCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 166151 0.72 0.657638
Target:  5'- gCGCCGGCGGcagcggCGCCGACGucguGCAc -3'
miRNA:   3'- -GCGGCCGCCauag--GCGGCUGUu---UGUa -5'
15967 3' -56.7 NC_004065.1 + 164560 0.66 0.93168
Target:  5'- aGCCGGCGGcgg-CGCCGACc----- -3'
miRNA:   3'- gCGGCCGCCauagGCGGCUGuuugua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.