miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 164178 0.66 0.92867
Target:  5'- aGCCGcaugucgucgugcgcGCGGaucUCCGCCGGCAucGCGUu -3'
miRNA:   3'- gCGGC---------------CGCCau-AGGCGGCUGUu-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 163430 0.69 0.808113
Target:  5'- aCGCC-GCGGUggCCGCCGcCGuGCAg -3'
miRNA:   3'- -GCGGcCGCCAuaGGCGGCuGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 159270 0.67 0.921332
Target:  5'- gGCagGGUGGUggCCGCCGAgCGGAUg- -3'
miRNA:   3'- gCGg-CCGCCAuaGGCGGCU-GUUUGua -5'
15967 3' -56.7 NC_004065.1 + 156899 0.66 0.926619
Target:  5'- gCGUCGG-GGUcccgauccUCCGCCGGCAccGACGa -3'
miRNA:   3'- -GCGGCCgCCAu-------AGGCGGCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 153286 0.68 0.884948
Target:  5'- cCGCCGGCGccgcgcccGUccCCGCCGAgGAguGCAa -3'
miRNA:   3'- -GCGGCCGC--------CAuaGGCGGCUgUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 152919 0.68 0.871102
Target:  5'- uGUCGGCGGcgcugCCGCCGcgGCAAAUc- -3'
miRNA:   3'- gCGGCCGCCaua--GGCGGC--UGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 152824 0.68 0.863874
Target:  5'- uCGCCGuGCGGggcgCCGCCGcGCAcuuguGGCAc -3'
miRNA:   3'- -GCGGC-CGCCaua-GGCGGC-UGU-----UUGUa -5'
15967 3' -56.7 NC_004065.1 + 150717 0.7 0.797746
Target:  5'- cCGCCGGUGGgaggcccaggCCGUCGACAGc--- -3'
miRNA:   3'- -GCGGCCGCCaua-------GGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 146761 0.69 0.841034
Target:  5'- gCGUCGGCGGcGUCUGCCG-CAu---- -3'
miRNA:   3'- -GCGGCCGCCaUAGGCGGCuGUuugua -5'
15967 3' -56.7 NC_004065.1 + 141653 0.66 0.936516
Target:  5'- gCGgUGGCGGUG-CCGCgGccGCGGACGa -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGgC--UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 141624 0.71 0.726049
Target:  5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3'
miRNA:   3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5'
15967 3' -56.7 NC_004065.1 + 139915 0.66 0.936516
Target:  5'- gGCCGGCGGcgccagcggguUGaacuucgucUCCGUCGACAGGa-- -3'
miRNA:   3'- gCGGCCGCC-----------AU---------AGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 138155 0.7 0.781821
Target:  5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3'
miRNA:   3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 132522 0.67 0.90413
Target:  5'- uCGUCGG-GGUgAUCCGCCG-CAGAUc- -3'
miRNA:   3'- -GCGGCCgCCA-UAGGCGGCuGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 127613 0.68 0.871102
Target:  5'- gCGCCGGCuccucccGUCCGUCGACGAGg-- -3'
miRNA:   3'- -GCGGCCGcca----UAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 124735 0.67 0.921332
Target:  5'- gCGCCGcacgcGUGGUGUUCaGCaCGGCGGGCAc -3'
miRNA:   3'- -GCGGC-----CGCCAUAGG-CG-GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 124648 0.67 0.921332
Target:  5'- uCGCCGGCcGUcagcgaguccggGUCCGCCGuCAGGa-- -3'
miRNA:   3'- -GCGGCCGcCA------------UAGGCGGCuGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 122500 0.66 0.945518
Target:  5'- aGCUgGGCGGUcgCCGCgCGcaccuccucguGCGAGCGg -3'
miRNA:   3'- gCGG-CCGCCAuaGGCG-GC-----------UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 122235 0.66 0.935089
Target:  5'- gGCCGGCGGgucguuccUGUCgccgcugcugcccgCGCCGACAccgaccuggGGCAUc -3'
miRNA:   3'- gCGGCCGCC--------AUAG--------------GCGGCUGU---------UUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.