miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 163430 0.69 0.808113
Target:  5'- aCGCC-GCGGUggCCGCCGcCGuGCAg -3'
miRNA:   3'- -GCGGcCGCCAuaGGCGGCuGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 69394 0.71 0.70676
Target:  5'- gCGCUGGCGGaacagCUGCCGACGGGg-- -3'
miRNA:   3'- -GCGGCCGCCaua--GGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 96560 0.71 0.716438
Target:  5'- uCGCUGGacucGUCCGCCGACGAGCc- -3'
miRNA:   3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 33217 0.71 0.745034
Target:  5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3'
miRNA:   3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 49670 0.7 0.754392
Target:  5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 138155 0.7 0.781821
Target:  5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3'
miRNA:   3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 207435 0.7 0.781821
Target:  5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3'
miRNA:   3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 150717 0.7 0.797746
Target:  5'- cCGCCGGUGGgaggcccaggCCGUCGACAGc--- -3'
miRNA:   3'- -GCGGCCGCCaua-------GGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 66773 0.7 0.799489
Target:  5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3'
miRNA:   3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 117171 0.71 0.697021
Target:  5'- gCGCCGaCGGgGUCCGCCccuggGGCAGGCGUu -3'
miRNA:   3'- -GCGGCcGCCaUAGGCGG-----CUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 65562 0.71 0.697021
Target:  5'- uCGCCGGCGGgucgcgaguaccUGUaCCGCgacgCGGCGAACAa -3'
miRNA:   3'- -GCGGCCGCC------------AUA-GGCG----GCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 120553 0.71 0.697021
Target:  5'- uGCCGGCGGcgGUCgGCgCGAgCGGGCGg -3'
miRNA:   3'- gCGGCCGCCa-UAGgCG-GCU-GUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 195118 0.78 0.35587
Target:  5'- uCGCCGGCGGUGUC-GCCGcagcACAGAUAc -3'
miRNA:   3'- -GCGGCCGCCAUAGgCGGC----UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 27282 0.75 0.492082
Target:  5'- aGaCCGGCGGcg-CCGCCGACGAcGCGUc -3'
miRNA:   3'- gC-GGCCGCCauaGGCGGCUGUU-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 65836 0.75 0.510813
Target:  5'- uGCCGGCGGagAUCCGCgCGcACGacGACAUg -3'
miRNA:   3'- gCGGCCGCCa-UAGGCG-GC-UGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 101428 0.73 0.627869
Target:  5'- gGUCGGagaagaGGUcgCCGCCGGCGGACc- -3'
miRNA:   3'- gCGGCCg-----CCAuaGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 118325 0.73 0.637799
Target:  5'- uCGCCaGCGGga-CCGCCGACGucCAUg -3'
miRNA:   3'- -GCGGcCGCCauaGGCGGCUGUuuGUA- -5'
15967 3' -56.7 NC_004065.1 + 166151 0.72 0.657638
Target:  5'- gCGCCGGCGGcagcggCGCCGACGucguGCAc -3'
miRNA:   3'- -GCGGCCGCCauag--GCGGCUGUu---UGUa -5'
15967 3' -56.7 NC_004065.1 + 96638 0.72 0.684286
Target:  5'- uCGCCGGCGGUcgCgagcucuuucucggCGUCGGCGGGCu- -3'
miRNA:   3'- -GCGGCCGCCAuaG--------------GCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 99225 0.72 0.687232
Target:  5'- gCGCCGGCcaGGcgAUCCGCCucGCGAACGc -3'
miRNA:   3'- -GCGGCCG--CCa-UAGGCGGc-UGUUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.