miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 27282 0.75 0.492082
Target:  5'- aGaCCGGCGGcg-CCGCCGACGAcGCGUc -3'
miRNA:   3'- gC-GGCCGCCauaGGCGGCUGUU-UGUA- -5'
15967 3' -56.7 NC_004065.1 + 195118 0.78 0.35587
Target:  5'- uCGCCGGCGGUGUC-GCCGcagcACAGAUAc -3'
miRNA:   3'- -GCGGCCGCCAUAGgCGGC----UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 32554 1.06 0.005841
Target:  5'- gCGCCGGCGGUAUCCGCCGACAAACAUg -3'
miRNA:   3'- -GCGGCCGCCAUAGGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 96560 0.71 0.716438
Target:  5'- uCGCUGGacucGUCCGCCGACGAGCc- -3'
miRNA:   3'- -GCGGCCgccaUAGGCGGCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 33217 0.71 0.745034
Target:  5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3'
miRNA:   3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 152919 0.68 0.871102
Target:  5'- uGUCGGCGGcgcugCCGCCGcgGCAAAUc- -3'
miRNA:   3'- gCGGCCGCCaua--GGCGGC--UGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 22002 0.68 0.863874
Target:  5'- aCGCCGaCGGUcaucgCCGCCGGCAcuAACc- -3'
miRNA:   3'- -GCGGCcGCCAua---GGCGGCUGU--UUGua -5'
15967 3' -56.7 NC_004065.1 + 199252 0.68 0.85645
Target:  5'- uCGUCGGCGuccgcGUCCGCCGACcucggauuccgaGGGCAg -3'
miRNA:   3'- -GCGGCCGCca---UAGGCGGCUG------------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 146761 0.69 0.841034
Target:  5'- gCGUCGGCGGcGUCUGCCG-CAu---- -3'
miRNA:   3'- -GCGGCCGCCaUAGGCGGCuGUuugua -5'
15967 3' -56.7 NC_004065.1 + 7332 0.69 0.841034
Target:  5'- cCGCCGGCugauGUAUCUGCCaACAAuucuACGUa -3'
miRNA:   3'- -GCGGCCGc---CAUAGGCGGcUGUU----UGUA- -5'
15967 3' -56.7 NC_004065.1 + 76377 0.69 0.833054
Target:  5'- gCGCCGGCGccg-CCGCgGAUGAGCu- -3'
miRNA:   3'- -GCGGCCGCcauaGGCGgCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 62615 0.69 0.824903
Target:  5'- cCGCCGGCGGcagcagCCG-CGGCAGcaGCAUu -3'
miRNA:   3'- -GCGGCCGCCaua---GGCgGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 163430 0.69 0.808113
Target:  5'- aCGCC-GCGGUggCCGCCGcCGuGCAg -3'
miRNA:   3'- -GCGGcCGCCAuaGGCGGCuGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 66773 0.7 0.799489
Target:  5'- gCGCCGGCGccgccgcUgCGCCGACgAAACAUg -3'
miRNA:   3'- -GCGGCCGCcau----AgGCGGCUG-UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 150717 0.7 0.797746
Target:  5'- cCGCCGGUGGgaggcccaggCCGUCGACAGc--- -3'
miRNA:   3'- -GCGGCCGCCaua-------GGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 207435 0.7 0.781821
Target:  5'- uCGCCaGGCGG--UCUGCCGA-AGACAUa -3'
miRNA:   3'- -GCGG-CCGCCauAGGCGGCUgUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 138155 0.7 0.781821
Target:  5'- gGCCGGCGGUGUUuaCGCUgguGGCGAGgAUc -3'
miRNA:   3'- gCGGCCGCCAUAG--GCGG---CUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 49670 0.7 0.754392
Target:  5'- cCG-UGGCGGUG-CCGCCGgaGCAGGCGUc -3'
miRNA:   3'- -GCgGCCGCCAUaGGCGGC--UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 78355 0.66 0.941129
Target:  5'- gCGCUGGCGGUAgagcucgCUGUCGuugaGGGCGUu -3'
miRNA:   3'- -GCGGCCGCCAUa------GGCGGCug--UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 203511 0.76 0.44673
Target:  5'- uGCCGGCGGgGUCCGUCGcguGACAUg -3'
miRNA:   3'- gCGGCCGCCaUAGGCGGCuguUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.