miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 82336 0.77 0.403802
Target:  5'- aGCCGGUGGUGU-CGCUGACGAucGCGUc -3'
miRNA:   3'- gCGGCCGCCAUAgGCGGCUGUU--UGUA- -5'
15967 3' -56.7 NC_004065.1 + 31555 0.7 0.754392
Target:  5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3'
miRNA:   3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 102890 0.7 0.763647
Target:  5'- cCGCCGcCGGUAgcgCCGCCGccGCGAugGg -3'
miRNA:   3'- -GCGGCcGCCAUa--GGCGGC--UGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 78355 0.66 0.941129
Target:  5'- gCGCUGGCGGUAgagcucgCUGUCGuugaGGGCGUu -3'
miRNA:   3'- -GCGGCCGCCAUa------GGCGGCug--UUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 197475 0.73 0.608027
Target:  5'- uGUCGGCGG-AUaCCGCCGGCGcGACGg -3'
miRNA:   3'- gCGGCCGCCaUA-GGCGGCUGU-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 32888 0.73 0.627869
Target:  5'- gCGCCGGCGaGcGUCUGCCGcUggGCAUc -3'
miRNA:   3'- -GCGGCCGC-CaUAGGCGGCuGuuUGUA- -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 121778 0.72 0.657638
Target:  5'- gGUCGGaCGGaAagCGCCGACGAGCGUa -3'
miRNA:   3'- gCGGCC-GCCaUagGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 111704 0.71 0.697021
Target:  5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3'
miRNA:   3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5'
15967 3' -56.7 NC_004065.1 + 65227 0.71 0.745034
Target:  5'- uGCCGGCGGUGgcgcCCGUcuCGACAAu--- -3'
miRNA:   3'- gCGGCCGCCAUa---GGCG--GCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 113935 0.71 0.726049
Target:  5'- uCGCCGGauGagcUCgGCCGACGAGCAg -3'
miRNA:   3'- -GCGGCCgcCau-AGgCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 99664 0.72 0.667532
Target:  5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3'
miRNA:   3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 203511 0.76 0.44673
Target:  5'- uGCCGGCGGgGUCCGUCGcguGACAUg -3'
miRNA:   3'- gCGGCCGCCaUAGGCGGCuguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 141624 0.71 0.726049
Target:  5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3'
miRNA:   3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5'
15967 3' -56.7 NC_004065.1 + 203152 0.74 0.543302
Target:  5'- gGCCGGCGGUGgaagauugcuuuuccUCCGCCGAUu----- -3'
miRNA:   3'- gCGGCCGCCAU---------------AGGCGGCUGuuugua -5'
15967 3' -56.7 NC_004065.1 + 109911 0.72 0.657638
Target:  5'- gCGCCGGCGaGUcAagCGCCGuACGGACAUu -3'
miRNA:   3'- -GCGGCCGC-CA-UagGCGGC-UGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 78815 0.71 0.735584
Target:  5'- gCGCCGGCGGUA-CCGgUGAUcaggAGGCGg -3'
miRNA:   3'- -GCGGCCGCCAUaGGCgGCUG----UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 63874 0.7 0.754392
Target:  5'- aCGUCGGCGccgcugCCGCCGGCGccGACGUc -3'
miRNA:   3'- -GCGGCCGCcaua--GGCGGCUGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 118225 0.74 0.558829
Target:  5'- aGaCCGGCGGUcaucggagCCGUCGACGGACGc -3'
miRNA:   3'- gC-GGCCGCCAua------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 172696 0.73 0.637799
Target:  5'- aGCC-GCGGUcgUCGCCGGCAAuCGUa -3'
miRNA:   3'- gCGGcCGCCAuaGGCGGCUGUUuGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.