miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 177490 0.7 0.799489
Target:  5'- gCGCaCGGCGGgg-CCGCCGGgGGuCAg -3'
miRNA:   3'- -GCG-GCCGCCauaGGCGGCUgUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 102890 0.7 0.763647
Target:  5'- cCGCCGcCGGUAgcgCCGCCGccGCGAugGg -3'
miRNA:   3'- -GCGGCcGCCAUa--GGCGGC--UGUUugUa -5'
15967 3' -56.7 NC_004065.1 + 99664 0.72 0.667532
Target:  5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3'
miRNA:   3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 118225 0.74 0.558829
Target:  5'- aGaCCGGCGGUcaucggagCCGUCGACGGACGc -3'
miRNA:   3'- gC-GGCCGCCAua------GGCGGCUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 127613 0.68 0.871102
Target:  5'- gCGCCGGCuccucccGUCCGUCGACGAGg-- -3'
miRNA:   3'- -GCGGCCGcca----UAGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 115080 0.68 0.848834
Target:  5'- gGCCGGCGGcg-CCGaCUGAUGAugAUc -3'
miRNA:   3'- gCGGCCGCCauaGGC-GGCUGUUugUA- -5'
15967 3' -56.7 NC_004065.1 + 31555 0.7 0.754392
Target:  5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3'
miRNA:   3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 203152 0.74 0.543302
Target:  5'- gGCCGGCGGUGgaagauugcuuuuccUCCGCCGAUu----- -3'
miRNA:   3'- gCGGCCGCCAU---------------AGGCGGCUGuuugua -5'
15967 3' -56.7 NC_004065.1 + 62377 0.68 0.848834
Target:  5'- aGCaCGGUcacGGccGUcCCGCCGACGAGCAUc -3'
miRNA:   3'- gCG-GCCG---CCa-UA-GGCGGCUGUUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 203511 0.76 0.44673
Target:  5'- uGCCGGCGGgGUCCGUCGcguGACAUg -3'
miRNA:   3'- gCGGCCGCCaUAGGCGGCuguUUGUA- -5'
15967 3' -56.7 NC_004065.1 + 63874 0.7 0.754392
Target:  5'- aCGUCGGCGccgcugCCGCCGGCGccGACGUc -3'
miRNA:   3'- -GCGGCCGCcaua--GGCGGCUGU--UUGUA- -5'
15967 3' -56.7 NC_004065.1 + 208191 0.69 0.816587
Target:  5'- aGCC-GCGGUAUCCcCCgGGCGGGCGa -3'
miRNA:   3'- gCGGcCGCCAUAGGcGG-CUGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 141624 0.71 0.726049
Target:  5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3'
miRNA:   3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5'
15967 3' -56.7 NC_004065.1 + 111704 0.71 0.697021
Target:  5'- aCGUCGGCGGUc-CCGCUGGC-GACGa -3'
miRNA:   3'- -GCGGCCGCCAuaGGCGGCUGuUUGUa -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 197475 0.73 0.608027
Target:  5'- uGUCGGCGG-AUaCCGCCGGCGcGACGg -3'
miRNA:   3'- gCGGCCGCCaUA-GGCGGCUGU-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 153286 0.68 0.884948
Target:  5'- cCGCCGGCGccgcgcccGUccCCGCCGAgGAguGCAa -3'
miRNA:   3'- -GCGGCCGC--------CAuaGGCGGCUgUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 210843 0.68 0.871102
Target:  5'- gGCCGGaGGUGUcCCGCCucGGCAGAa-- -3'
miRNA:   3'- gCGGCCgCCAUA-GGCGG--CUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 65471 0.68 0.863874
Target:  5'- gGUCGGCGccg-CCGCCGGCucGACAc -3'
miRNA:   3'- gCGGCCGCcauaGGCGGCUGu-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 86316 0.68 0.85645
Target:  5'- uCGCCGGCgccgaccuGGUcUUCGUCGuCAGACGUa -3'
miRNA:   3'- -GCGGCCG--------CCAuAGGCGGCuGUUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.