miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 3' -56.7 NC_004065.1 + 197475 0.73 0.608027
Target:  5'- uGUCGGCGG-AUaCCGCCGGCGcGACGg -3'
miRNA:   3'- gCGGCCGCCaUA-GGCGGCUGU-UUGUa -5'
15967 3' -56.7 NC_004065.1 + 132020 0.72 0.647724
Target:  5'- gCGCCGGCGGUGgugaCC-CaCGACGAACu- -3'
miRNA:   3'- -GCGGCCGCCAUa---GGcG-GCUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 99664 0.72 0.667532
Target:  5'- aGCCGGCGGcgcggCGCCGACAG-CGUc -3'
miRNA:   3'- gCGGCCGCCauag-GCGGCUGUUuGUA- -5'
15967 3' -56.7 NC_004065.1 + 139915 0.66 0.936516
Target:  5'- gGCCGGCGGcgccagcggguUGaacuucgucUCCGUCGACAGGa-- -3'
miRNA:   3'- gCGGCCGCC-----------AU---------AGGCGGCUGUUUgua -5'
15967 3' -56.7 NC_004065.1 + 156899 0.66 0.926619
Target:  5'- gCGUCGG-GGUcccgauccUCCGCCGGCAccGACGa -3'
miRNA:   3'- -GCGGCCgCCAu-------AGGCGGCUGU--UUGUa -5'
15967 3' -56.7 NC_004065.1 + 41382 0.67 0.90413
Target:  5'- cCGCUGGUcguGGUGUgguacgugcucgCCGCCGGCGAcACGg -3'
miRNA:   3'- -GCGGCCG---CCAUA------------GGCGGCUGUU-UGUa -5'
15967 3' -56.7 NC_004065.1 + 153286 0.68 0.884948
Target:  5'- cCGCCGGCGccgcgcccGUccCCGCCGAgGAguGCAa -3'
miRNA:   3'- -GCGGCCGC--------CAuaGGCGGCUgUU--UGUa -5'
15967 3' -56.7 NC_004065.1 + 152824 0.68 0.863874
Target:  5'- uCGCCGuGCGGggcgCCGCCGcGCAcuuguGGCAc -3'
miRNA:   3'- -GCGGC-CGCCaua-GGCGGC-UGU-----UUGUa -5'
15967 3' -56.7 NC_004065.1 + 27690 0.68 0.863874
Target:  5'- gGCCGGaGGcucugAUCCGCCcGGCGGACc- -3'
miRNA:   3'- gCGGCCgCCa----UAGGCGG-CUGUUUGua -5'
15967 3' -56.7 NC_004065.1 + 120162 0.69 0.841034
Target:  5'- aCGCCGGUGGca-CCGCcCGGCAccuGCGc -3'
miRNA:   3'- -GCGGCCGCCauaGGCG-GCUGUu--UGUa -5'
15967 3' -56.7 NC_004065.1 + 177490 0.7 0.799489
Target:  5'- gCGCaCGGCGGgg-CCGCCGGgGGuCAg -3'
miRNA:   3'- -GCG-GCCGCCauaGGCGGCUgUUuGUa -5'
15967 3' -56.7 NC_004065.1 + 31555 0.7 0.754392
Target:  5'- uGCUGGUGGUGUUCuCCGACccGAACGc -3'
miRNA:   3'- gCGGCCGCCAUAGGcGGCUG--UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 141624 0.71 0.726049
Target:  5'- uGCCGGCGGUGgcggCuCGgCGACGGAgGg -3'
miRNA:   3'- gCGGCCGCCAUa---G-GCgGCUGUUUgUa -5'
15967 3' -56.7 NC_004065.1 + 80649 0.68 0.878129
Target:  5'- gGCCGGCGGUcgcgagcaacauAUCCcuGCCGAUcuuggugauagAAGCGg -3'
miRNA:   3'- gCGGCCGCCA------------UAGG--CGGCUG-----------UUUGUa -5'
15967 3' -56.7 NC_004065.1 + 109148 0.68 0.878129
Target:  5'- uGaCGGCGGU-UCCGUCGACAAc--- -3'
miRNA:   3'- gCgGCCGCCAuAGGCGGCUGUUugua -5'
15967 3' -56.7 NC_004065.1 + 48118 0.66 0.947213
Target:  5'- gCGgCGGCGGUGggaccucgcgcacgUUGCCGACGuGCGg -3'
miRNA:   3'- -GCgGCCGCCAUa-------------GGCGGCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 52883 0.66 0.945518
Target:  5'- aCGCCcGCGGUAagccUCCGauGACAcACAa -3'
miRNA:   3'- -GCGGcCGCCAU----AGGCggCUGUuUGUa -5'
15967 3' -56.7 NC_004065.1 + 122500 0.66 0.945518
Target:  5'- aGCUgGGCGGUcgCCGCgCGcaccuccucguGCGAGCGg -3'
miRNA:   3'- gCGG-CCGCCAuaGGCG-GC-----------UGUUUGUa -5'
15967 3' -56.7 NC_004065.1 + 33217 0.71 0.745034
Target:  5'- uCGCgGGCgaGGUGUCCGCaGACGAGgGUc -3'
miRNA:   3'- -GCGgCCG--CCAUAGGCGgCUGUUUgUA- -5'
15967 3' -56.7 NC_004065.1 + 119465 0.68 0.878129
Target:  5'- aCGCCuGGCGGa--CCGCCGA--AGCGUc -3'
miRNA:   3'- -GCGG-CCGCCauaGGCGGCUguUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.