Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 31370 | 0.66 | 0.978005 |
Target: 5'- gGGAcgGAGUCUGaUCgGCCGgcGGauccucucGGCCGg -3' miRNA: 3'- -CCUa-CUCGGAC-AG-CGGCauCU--------UCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 121205 | 0.66 | 0.975641 |
Target: 5'- aGGccGucAGCCUGUUGCCGcggcuGAacGGCCGc -3' miRNA: 3'- -CCuaC--UCGGACAGCGGCau---CU--UCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 64895 | 0.66 | 0.970366 |
Target: 5'- cGGAgaagagcgGcGCCaGUCGCCGggcgGGAcGCCGc -3' miRNA: 3'- -CCUa-------CuCGGaCAGCGGCa---UCUuCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 63512 | 0.66 | 0.970366 |
Target: 5'- cGGAUG-GCCUcgcccucgCgGCCGUAGAucGCCGc -3' miRNA: 3'- -CCUACuCGGAca------G-CGGCAUCUu-CGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 80495 | 0.66 | 0.970366 |
Target: 5'- ---aGGGCUuccuUGUCgauGCCGUAGaAAGCCGc -3' miRNA: 3'- ccuaCUCGG----ACAG---CGGCAUC-UUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 58584 | 0.66 | 0.967442 |
Target: 5'- cGGAUGAGCUcGcCGacgaCGgcGGAGUCGa -3' miRNA: 3'- -CCUACUCGGaCaGCg---GCauCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 71939 | 0.66 | 0.976608 |
Target: 5'- cGGUG-GCCUGgucggaggcgacgcCGCCGguGGAGCCGg -3' miRNA: 3'- cCUACuCGGACa-------------GCGGCauCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 209299 | 0.66 | 0.978005 |
Target: 5'- -cGUGAucGCCgucGUCGCCGUcGguGCCGu -3' miRNA: 3'- ccUACU--CGGa--CAGCGGCAuCuuCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 136470 | 0.66 | 0.978005 |
Target: 5'- ---nGAGCCggaaaGCCG-GGGAGCCGa -3' miRNA: 3'- ccuaCUCGGacag-CGGCaUCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 146597 | 0.66 | 0.964319 |
Target: 5'- gGGGUG-GCCaucgggGcCGUCGgcGggGCCGu -3' miRNA: 3'- -CCUACuCGGa-----CaGCGGCauCuuCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 119519 | 0.66 | 0.964319 |
Target: 5'- ---cGAGCCUGUCGacauccuuguCCGgGGcGGCCGu -3' miRNA: 3'- ccuaCUCGGACAGC----------GGCaUCuUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 186962 | 0.66 | 0.978005 |
Target: 5'- -cGUGcGGUCUGUcgCGCCGacgccucgAGAAGCCGa -3' miRNA: 3'- ccUAC-UCGGACA--GCGGCa-------UCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 126730 | 0.67 | 0.960992 |
Target: 5'- --cUGAGCCUGcCGCCGc---GGCCu -3' miRNA: 3'- ccuACUCGGACaGCGGCaucuUCGGc -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 210721 | 0.67 | 0.94556 |
Target: 5'- aGGAUGAcGCCcGUCGCCGgac-GGUCc -3' miRNA: 3'- -CCUACU-CGGaCAGCGGCaucuUCGGc -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 30989 | 0.67 | 0.962348 |
Target: 5'- uGGUGuGUgUGUgCGCCGggguggcgagauggAGAGGCCGg -3' miRNA: 3'- cCUACuCGgACA-GCGGCa-------------UCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 60079 | 0.67 | 0.960992 |
Target: 5'- ---cGGGCCgcgcucGUCGUCGUcgaAGAGGUCGg -3' miRNA: 3'- ccuaCUCGGa-----CAGCGGCA---UCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 47297 | 0.67 | 0.953709 |
Target: 5'- cGGUG-GCCccggcGUCGcCCGU-GAGGCCGa -3' miRNA: 3'- cCUACuCGGa----CAGC-GGCAuCUUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 82323 | 0.67 | 0.953709 |
Target: 5'- gGGAUGuGCCcGagGCCGU---AGCCGu -3' miRNA: 3'- -CCUACuCGGaCagCGGCAucuUCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 96849 | 0.68 | 0.941153 |
Target: 5'- aGAcGGcGCgCUGUCGCCGcGGgcGCCGu -3' miRNA: 3'- cCUaCU-CG-GACAGCGGCaUCuuCGGC- -5' |
|||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 99340 | 0.68 | 0.931665 |
Target: 5'- cGAaGAGUCUGaCGCaagGGAAGCCGa -3' miRNA: 3'- cCUaCUCGGACaGCGgcaUCUUCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home