miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 5' -55.1 NC_004065.1 + 32588 1.12 0.003897
Target:  5'- gGGAUGAGCCUGUCGCCGUAGAAGCCGg -3'
miRNA:   3'- -CCUACUCGGACAGCGGCAUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 212576 0.72 0.762717
Target:  5'- aGGGUG-GCUucacgUGUCGCCagAGAGGCCGc -3'
miRNA:   3'- -CCUACuCGG-----ACAGCGGcaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 136329 0.72 0.780991
Target:  5'- cGGUGAGCCgaggaggGUaGCCGggaagcugGGGAGCCGa -3'
miRNA:   3'- cCUACUCGGa------CAgCGGCa-------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 76392 0.72 0.789942
Target:  5'- cGGAUGAGCUcGcCGCCGUccgAGuggcgccgcccGAGCCGa -3'
miRNA:   3'- -CCUACUCGGaCaGCGGCA---UC-----------UUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 95180 0.71 0.824316
Target:  5'- aGGGUccaGGGCCcGUCuCCGggGGAGGCCGa -3'
miRNA:   3'- -CCUA---CUCGGaCAGcGGCa-UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 99628 0.7 0.863509
Target:  5'- aGAUGAGgucaCUGUgGCUGUgccaguagauggAGAAGCCGg -3'
miRNA:   3'- cCUACUCg---GACAgCGGCA------------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 136433 0.69 0.884699
Target:  5'- cGGUGAGCCgagGUCgguaggcgggaaGCUG-GGGAGCCGa -3'
miRNA:   3'- cCUACUCGGa--CAG------------CGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 8126 0.69 0.884699
Target:  5'- ---aGAGCCgggCGCCGUcGAGGUCGa -3'
miRNA:   3'- ccuaCUCGGacaGCGGCAuCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 115183 0.69 0.884699
Target:  5'- aGGAUGGcCCUGgauccgGCCGUGGccGCCGc -3'
miRNA:   3'- -CCUACUcGGACag----CGGCAUCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 63711 0.69 0.891344
Target:  5'- gGGccGUGAucGCCUGguggucggCGCCGUAGAcauAGCCc -3'
miRNA:   3'- -CC--UACU--CGGACa-------GCGGCAUCU---UCGGc -5'
15967 5' -55.1 NC_004065.1 + 128393 0.69 0.891344
Target:  5'- ---aGAGCCg---GCUGUGGggGCCGa -3'
miRNA:   3'- ccuaCUCGGacagCGGCAUCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 88821 0.69 0.891344
Target:  5'- cGGAUcuGCCUGUCGUCGgcGcGGUCa -3'
miRNA:   3'- -CCUAcuCGGACAGCGGCauCuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 186148 0.69 0.897772
Target:  5'- --cUGAGg--GUgGCCGUGGAGGCCGc -3'
miRNA:   3'- ccuACUCggaCAgCGGCAUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 146181 0.69 0.903982
Target:  5'- ---cGAGCCcucCGCCGUGGgcGCCa -3'
miRNA:   3'- ccuaCUCGGacaGCGGCAUCuuCGGc -5'
15967 5' -55.1 NC_004065.1 + 109122 0.69 0.903982
Target:  5'- cGGAcugcGGGUgCUGUCGCCGcgAGAcGCCGc -3'
miRNA:   3'- -CCUa---CUCG-GACAGCGGCa-UCUuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 82809 0.69 0.909969
Target:  5'- gGGGUGGGgaaguacuUCUGcUCGUCG-GGAAGCCGg -3'
miRNA:   3'- -CCUACUC--------GGAC-AGCGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 95394 0.69 0.909969
Target:  5'- ---cGAGCCUGUCGCgGUcguccucgcuAGcGGCCu -3'
miRNA:   3'- ccuaCUCGGACAGCGgCA----------UCuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 75575 0.68 0.92127
Target:  5'- cGGccGUGAcGUUcgUGUCGCCGgcggggGGAGGCCGc -3'
miRNA:   3'- -CC--UACU-CGG--ACAGCGGCa-----UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 107818 0.68 0.926581
Target:  5'- cGGGccaccAGCCUGUaggCGCCGUAGAugGGCaCGa -3'
miRNA:   3'- -CCUac---UCGGACA---GCGGCAUCU--UCG-GC- -5'
15967 5' -55.1 NC_004065.1 + 48333 0.68 0.926581
Target:  5'- aGGAUGAGCCgggGUCGgaagaCCG-AGGucgcGGCCu -3'
miRNA:   3'- -CCUACUCGGa--CAGC-----GGCaUCU----UCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.