miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 5' -55.1 NC_004065.1 + 8126 0.69 0.884699
Target:  5'- ---aGAGCCgggCGCCGUcGAGGUCGa -3'
miRNA:   3'- ccuaCUCGGacaGCGGCAuCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 30989 0.67 0.962348
Target:  5'- uGGUGuGUgUGUgCGCCGggguggcgagauggAGAGGCCGg -3'
miRNA:   3'- cCUACuCGgACA-GCGGCa-------------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 31370 0.66 0.978005
Target:  5'- gGGAcgGAGUCUGaUCgGCCGgcGGauccucucGGCCGg -3'
miRNA:   3'- -CCUa-CUCGGAC-AG-CGGCauCU--------UCGGC- -5'
15967 5' -55.1 NC_004065.1 + 32588 1.12 0.003897
Target:  5'- gGGAUGAGCCUGUCGCCGUAGAAGCCGg -3'
miRNA:   3'- -CCUACUCGGACAGCGGCAUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 47297 0.67 0.953709
Target:  5'- cGGUG-GCCccggcGUCGcCCGU-GAGGCCGa -3'
miRNA:   3'- cCUACuCGGa----CAGC-GGCAuCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 48333 0.68 0.926581
Target:  5'- aGGAUGAGCCgggGUCGgaagaCCG-AGGucgcGGCCu -3'
miRNA:   3'- -CCUACUCGGa--CAGC-----GGCaUCU----UCGGc -5'
15967 5' -55.1 NC_004065.1 + 58584 0.66 0.967442
Target:  5'- cGGAUGAGCUcGcCGacgaCGgcGGAGUCGa -3'
miRNA:   3'- -CCUACUCGGaCaGCg---GCauCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 60079 0.67 0.960992
Target:  5'- ---cGGGCCgcgcucGUCGUCGUcgaAGAGGUCGg -3'
miRNA:   3'- ccuaCUCGGa-----CAGCGGCA---UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 63512 0.66 0.970366
Target:  5'- cGGAUG-GCCUcgcccucgCgGCCGUAGAucGCCGc -3'
miRNA:   3'- -CCUACuCGGAca------G-CGGCAUCUu-CGGC- -5'
15967 5' -55.1 NC_004065.1 + 63711 0.69 0.891344
Target:  5'- gGGccGUGAucGCCUGguggucggCGCCGUAGAcauAGCCc -3'
miRNA:   3'- -CC--UACU--CGGACa-------GCGGCAUCU---UCGGc -5'
15967 5' -55.1 NC_004065.1 + 64895 0.66 0.970366
Target:  5'- cGGAgaagagcgGcGCCaGUCGCCGggcgGGAcGCCGc -3'
miRNA:   3'- -CCUa-------CuCGGaCAGCGGCa---UCUuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 71939 0.66 0.976608
Target:  5'- cGGUG-GCCUGgucggaggcgacgcCGCCGguGGAGCCGg -3'
miRNA:   3'- cCUACuCGGACa-------------GCGGCauCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 75575 0.68 0.92127
Target:  5'- cGGccGUGAcGUUcgUGUCGCCGgcggggGGAGGCCGc -3'
miRNA:   3'- -CC--UACU-CGG--ACAGCGGCa-----UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 76392 0.72 0.789942
Target:  5'- cGGAUGAGCUcGcCGCCGUccgAGuggcgccgcccGAGCCGa -3'
miRNA:   3'- -CCUACUCGGaCaGCGGCA---UC-----------UUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 80495 0.66 0.970366
Target:  5'- ---aGGGCUuccuUGUCgauGCCGUAGaAAGCCGc -3'
miRNA:   3'- ccuaCUCGG----ACAG---CGGCAUC-UUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 82323 0.67 0.953709
Target:  5'- gGGAUGuGCCcGagGCCGU---AGCCGu -3'
miRNA:   3'- -CCUACuCGGaCagCGGCAucuUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 82809 0.69 0.909969
Target:  5'- gGGGUGGGgaaguacuUCUGcUCGUCG-GGAAGCCGg -3'
miRNA:   3'- -CCUACUC--------GGAC-AGCGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 88821 0.69 0.891344
Target:  5'- cGGAUcuGCCUGUCGUCGgcGcGGUCa -3'
miRNA:   3'- -CCUAcuCGGACAGCGGCauCuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 95180 0.71 0.824316
Target:  5'- aGGGUccaGGGCCcGUCuCCGggGGAGGCCGa -3'
miRNA:   3'- -CCUA---CUCGGaCAGcGGCa-UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 95394 0.69 0.909969
Target:  5'- ---cGAGCCUGUCGCgGUcguccucgcuAGcGGCCu -3'
miRNA:   3'- ccuaCUCGGACAGCGgCA----------UCuUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.