Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15967 | 5' | -55.1 | NC_004065.1 | + | 212576 | 0.72 | 0.762717 |
Target: 5'- aGGGUG-GCUucacgUGUCGCCagAGAGGCCGc -3' miRNA: 3'- -CCUACuCGG-----ACAGCGGcaUCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 211678 | 0.68 | 0.931665 |
Target: 5'- --uUGAGCCUGccUCGCUuucGAGGCCGc -3' miRNA: 3'- ccuACUCGGAC--AGCGGcauCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 210721 | 0.67 | 0.94556 |
Target: 5'- aGGAUGAcGCCcGUCGCCGgac-GGUCc -3' miRNA: 3'- -CCUACU-CGGaCAGCGGCaucuUCGGc -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 209299 | 0.66 | 0.978005 |
Target: 5'- -cGUGAucGCCgucGUCGCCGUcGguGCCGu -3' miRNA: 3'- ccUACU--CGGa--CAGCGGCAuCuuCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 207466 | 0.68 | 0.936522 |
Target: 5'- gGGGUGAGCCgugCGCUGggguuGAGGUgGg -3' miRNA: 3'- -CCUACUCGGacaGCGGCau---CUUCGgC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 186962 | 0.66 | 0.978005 |
Target: 5'- -cGUGcGGUCUGUcgCGCCGacgccucgAGAAGCCGa -3' miRNA: 3'- ccUAC-UCGGACA--GCGGCa-------UCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 186148 | 0.69 | 0.897772 |
Target: 5'- --cUGAGg--GUgGCCGUGGAGGCCGc -3' miRNA: 3'- ccuACUCggaCAgCGGCAUCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 146597 | 0.66 | 0.964319 |
Target: 5'- gGGGUG-GCCaucgggGcCGUCGgcGggGCCGu -3' miRNA: 3'- -CCUACuCGGa-----CaGCGGCauCuuCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 146181 | 0.69 | 0.903982 |
Target: 5'- ---cGAGCCcucCGCCGUGGgcGCCa -3' miRNA: 3'- ccuaCUCGGacaGCGGCAUCuuCGGc -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 136470 | 0.66 | 0.978005 |
Target: 5'- ---nGAGCCggaaaGCCG-GGGAGCCGa -3' miRNA: 3'- ccuaCUCGGacag-CGGCaUCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 136433 | 0.69 | 0.884699 |
Target: 5'- cGGUGAGCCgagGUCgguaggcgggaaGCUG-GGGAGCCGa -3' miRNA: 3'- cCUACUCGGa--CAG------------CGGCaUCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 136329 | 0.72 | 0.780991 |
Target: 5'- cGGUGAGCCgaggaggGUaGCCGggaagcugGGGAGCCGa -3' miRNA: 3'- cCUACUCGGa------CAgCGGCa-------UCUUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 128393 | 0.69 | 0.891344 |
Target: 5'- ---aGAGCCg---GCUGUGGggGCCGa -3' miRNA: 3'- ccuaCUCGGacagCGGCAUCuuCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 126730 | 0.67 | 0.960992 |
Target: 5'- --cUGAGCCUGcCGCCGc---GGCCu -3' miRNA: 3'- ccuACUCGGACaGCGGCaucuUCGGc -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 121205 | 0.66 | 0.975641 |
Target: 5'- aGGccGucAGCCUGUUGCCGcggcuGAacGGCCGc -3' miRNA: 3'- -CCuaC--UCGGACAGCGGCau---CU--UCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 119519 | 0.66 | 0.964319 |
Target: 5'- ---cGAGCCUGUCGacauccuuguCCGgGGcGGCCGu -3' miRNA: 3'- ccuaCUCGGACAGC----------GGCaUCuUCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 115183 | 0.69 | 0.884699 |
Target: 5'- aGGAUGGcCCUGgauccgGCCGUGGccGCCGc -3' miRNA: 3'- -CCUACUcGGACag----CGGCAUCuuCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 109122 | 0.69 | 0.903982 |
Target: 5'- cGGAcugcGGGUgCUGUCGCCGcgAGAcGCCGc -3' miRNA: 3'- -CCUa---CUCG-GACAGCGGCa-UCUuCGGC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 107818 | 0.68 | 0.926581 |
Target: 5'- cGGGccaccAGCCUGUaggCGCCGUAGAugGGCaCGa -3' miRNA: 3'- -CCUac---UCGGACA---GCGGCAUCU--UCG-GC- -5' |
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15967 | 5' | -55.1 | NC_004065.1 | + | 99628 | 0.7 | 0.863509 |
Target: 5'- aGAUGAGgucaCUGUgGCUGUgccaguagauggAGAAGCCGg -3' miRNA: 3'- cCUACUCg---GACAgCGGCA------------UCUUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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