miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 5' -55.1 NC_004065.1 + 71939 0.66 0.976608
Target:  5'- cGGUG-GCCUGgucggaggcgacgcCGCCGguGGAGCCGg -3'
miRNA:   3'- cCUACuCGGACa-------------GCGGCauCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 82323 0.67 0.953709
Target:  5'- gGGAUGuGCCcGagGCCGU---AGCCGu -3'
miRNA:   3'- -CCUACuCGGaCagCGGCAucuUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 47297 0.67 0.953709
Target:  5'- cGGUG-GCCccggcGUCGcCCGU-GAGGCCGa -3'
miRNA:   3'- cCUACuCGGa----CAGC-GGCAuCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 60079 0.67 0.960992
Target:  5'- ---cGGGCCgcgcucGUCGUCGUcgaAGAGGUCGg -3'
miRNA:   3'- ccuaCUCGGa-----CAGCGGCA---UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 58584 0.66 0.967442
Target:  5'- cGGAUGAGCUcGcCGacgaCGgcGGAGUCGa -3'
miRNA:   3'- -CCUACUCGGaCaGCg---GCauCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 80495 0.66 0.970366
Target:  5'- ---aGGGCUuccuUGUCgauGCCGUAGaAAGCCGc -3'
miRNA:   3'- ccuaCUCGG----ACAG---CGGCAUC-UUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 63512 0.66 0.970366
Target:  5'- cGGAUG-GCCUcgcccucgCgGCCGUAGAucGCCGc -3'
miRNA:   3'- -CCUACuCGGAca------G-CGGCAUCUu-CGGC- -5'
15967 5' -55.1 NC_004065.1 + 64895 0.66 0.970366
Target:  5'- cGGAgaagagcgGcGCCaGUCGCCGggcgGGAcGCCGc -3'
miRNA:   3'- -CCUa-------CuCGGaCAGCGGCa---UCUuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 121205 0.66 0.975641
Target:  5'- aGGccGucAGCCUGUUGCCGcggcuGAacGGCCGc -3'
miRNA:   3'- -CCuaC--UCGGACAGCGGCau---CU--UCGGC- -5'
15967 5' -55.1 NC_004065.1 + 96849 0.68 0.941153
Target:  5'- aGAcGGcGCgCUGUCGCCGcGGgcGCCGu -3'
miRNA:   3'- cCUaCU-CG-GACAGCGGCaUCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 211678 0.68 0.931665
Target:  5'- --uUGAGCCUGccUCGCUuucGAGGCCGc -3'
miRNA:   3'- ccuACUCGGAC--AGCGGcauCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 107818 0.68 0.926581
Target:  5'- cGGGccaccAGCCUGUaggCGCCGUAGAugGGCaCGa -3'
miRNA:   3'- -CCUac---UCGGACA---GCGGCAUCU--UCG-GC- -5'
15967 5' -55.1 NC_004065.1 + 76392 0.72 0.789942
Target:  5'- cGGAUGAGCUcGcCGCCGUccgAGuggcgccgcccGAGCCGa -3'
miRNA:   3'- -CCUACUCGGaCaGCGGCA---UC-----------UUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 115183 0.69 0.884699
Target:  5'- aGGAUGGcCCUGgauccgGCCGUGGccGCCGc -3'
miRNA:   3'- -CCUACUcGGACag----CGGCAUCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 128393 0.69 0.891344
Target:  5'- ---aGAGCCg---GCUGUGGggGCCGa -3'
miRNA:   3'- ccuaCUCGGacagCGGCAUCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 63711 0.69 0.891344
Target:  5'- gGGccGUGAucGCCUGguggucggCGCCGUAGAcauAGCCc -3'
miRNA:   3'- -CC--UACU--CGGACa-------GCGGCAUCU---UCGGc -5'
15967 5' -55.1 NC_004065.1 + 186148 0.69 0.897772
Target:  5'- --cUGAGg--GUgGCCGUGGAGGCCGc -3'
miRNA:   3'- ccuACUCggaCAgCGGCAUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 146181 0.69 0.903982
Target:  5'- ---cGAGCCcucCGCCGUGGgcGCCa -3'
miRNA:   3'- ccuaCUCGGacaGCGGCAUCuuCGGc -5'
15967 5' -55.1 NC_004065.1 + 75575 0.68 0.92127
Target:  5'- cGGccGUGAcGUUcgUGUCGCCGgcggggGGAGGCCGc -3'
miRNA:   3'- -CC--UACU-CGG--ACAGCGGCa-----UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 48333 0.68 0.926581
Target:  5'- aGGAUGAGCCgggGUCGgaagaCCG-AGGucgcGGCCu -3'
miRNA:   3'- -CCUACUCGGa--CAGC-----GGCaUCU----UCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.