miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15967 5' -55.1 NC_004065.1 + 212576 0.72 0.762717
Target:  5'- aGGGUG-GCUucacgUGUCGCCagAGAGGCCGc -3'
miRNA:   3'- -CCUACuCGG-----ACAGCGGcaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 146597 0.66 0.964319
Target:  5'- gGGGUG-GCCaucgggGcCGUCGgcGggGCCGu -3'
miRNA:   3'- -CCUACuCGGa-----CaGCGGCauCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 136470 0.66 0.978005
Target:  5'- ---nGAGCCggaaaGCCG-GGGAGCCGa -3'
miRNA:   3'- ccuaCUCGGacag-CGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 209299 0.66 0.978005
Target:  5'- -cGUGAucGCCgucGUCGCCGUcGguGCCGu -3'
miRNA:   3'- ccUACU--CGGa--CAGCGGCAuCuuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 8126 0.69 0.884699
Target:  5'- ---aGAGCCgggCGCCGUcGAGGUCGa -3'
miRNA:   3'- ccuaCUCGGacaGCGGCAuCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 136433 0.69 0.884699
Target:  5'- cGGUGAGCCgagGUCgguaggcgggaaGCUG-GGGAGCCGa -3'
miRNA:   3'- cCUACUCGGa--CAG------------CGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 109122 0.69 0.903982
Target:  5'- cGGAcugcGGGUgCUGUCGCCGcgAGAcGCCGc -3'
miRNA:   3'- -CCUa---CUCG-GACAGCGGCa-UCUuCGGC- -5'
15967 5' -55.1 NC_004065.1 + 82809 0.69 0.909969
Target:  5'- gGGGUGGGgaaguacuUCUGcUCGUCG-GGAAGCCGg -3'
miRNA:   3'- -CCUACUC--------GGAC-AGCGGCaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 207466 0.68 0.936522
Target:  5'- gGGGUGAGCCgugCGCUGggguuGAGGUgGg -3'
miRNA:   3'- -CCUACUCGGacaGCGGCau---CUUCGgC- -5'
15967 5' -55.1 NC_004065.1 + 126730 0.67 0.960992
Target:  5'- --cUGAGCCUGcCGCCGc---GGCCu -3'
miRNA:   3'- ccuACUCGGACaGCGGCaucuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 99340 0.68 0.931665
Target:  5'- cGAaGAGUCUGaCGCaagGGAAGCCGa -3'
miRNA:   3'- cCUaCUCGGACaGCGgcaUCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 136329 0.72 0.780991
Target:  5'- cGGUGAGCCgaggaggGUaGCCGggaagcugGGGAGCCGa -3'
miRNA:   3'- cCUACUCGGa------CAgCGGCa-------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 30989 0.67 0.962348
Target:  5'- uGGUGuGUgUGUgCGCCGggguggcgagauggAGAGGCCGg -3'
miRNA:   3'- cCUACuCGgACA-GCGGCa-------------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 95180 0.71 0.824316
Target:  5'- aGGGUccaGGGCCcGUCuCCGggGGAGGCCGa -3'
miRNA:   3'- -CCUA---CUCGGaCAGcGGCa-UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 95394 0.69 0.909969
Target:  5'- ---cGAGCCUGUCGCgGUcguccucgcuAGcGGCCu -3'
miRNA:   3'- ccuaCUCGGACAGCGgCA----------UCuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 119519 0.66 0.964319
Target:  5'- ---cGAGCCUGUCGacauccuuguCCGgGGcGGCCGu -3'
miRNA:   3'- ccuaCUCGGACAGC----------GGCaUCuUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 186962 0.66 0.978005
Target:  5'- -cGUGcGGUCUGUcgCGCCGacgccucgAGAAGCCGa -3'
miRNA:   3'- ccUAC-UCGGACA--GCGGCa-------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 99628 0.7 0.863509
Target:  5'- aGAUGAGgucaCUGUgGCUGUgccaguagauggAGAAGCCGg -3'
miRNA:   3'- cCUACUCg---GACAgCGGCA------------UCUUCGGC- -5'
15967 5' -55.1 NC_004065.1 + 88821 0.69 0.891344
Target:  5'- cGGAUcuGCCUGUCGUCGgcGcGGUCa -3'
miRNA:   3'- -CCUAcuCGGACAGCGGCauCuUCGGc -5'
15967 5' -55.1 NC_004065.1 + 210721 0.67 0.94556
Target:  5'- aGGAUGAcGCCcGUCGCCGgac-GGUCc -3'
miRNA:   3'- -CCUACU-CGGaCAGCGGCaucuUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.