miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1597 5' -57.2 NC_001347.2 + 113185 0.66 0.922127
Target:  5'- -cCCcAGCCGcCGGCGUGGcgGCCuGAc -3'
miRNA:   3'- aaGGuUCGGC-GUCGCGCCuuUGG-CUc -5'
1597 5' -57.2 NC_001347.2 + 88923 0.66 0.922127
Target:  5'- cUCCAGGUccaaauCGCAcGuCGCcGAAACCGAGu -3'
miRNA:   3'- aAGGUUCG------GCGU-C-GCGcCUUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 161407 0.66 0.920495
Target:  5'- --aCGAGuCCGCAGauCGCGGAucuuuuccaacugcGACCGAa -3'
miRNA:   3'- aagGUUC-GGCGUC--GCGCCU--------------UUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 85345 0.66 0.916605
Target:  5'- -gCCAGcGCCGUcGCccGCGGcuAGGCCGAGa -3'
miRNA:   3'- aaGGUU-CGGCGuCG--CGCC--UUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 914 0.66 0.910856
Target:  5'- -cCCuuGGUCGCGGcCGCGG-GGCCGGa -3'
miRNA:   3'- aaGGu-UCGGCGUC-GCGCCuUUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 157402 0.66 0.910856
Target:  5'- cUUCCugcgcgaauGGCUGguGUGuCGGcAAGCCGAGc -3'
miRNA:   3'- -AAGGu--------UCGGCguCGC-GCC-UUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 135966 0.66 0.904881
Target:  5'- -gCCGGGCCGuCGGaUGgGGGggUCGAGc -3'
miRNA:   3'- aaGGUUCGGC-GUC-GCgCCUuuGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 210644 0.66 0.904881
Target:  5'- gUCCAAGCCGUGGgcccacUGCGGccGCUGGa -3'
miRNA:   3'- aAGGUUCGGCGUC------GCGCCuuUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 117847 0.66 0.904881
Target:  5'- -aCCGgcGGCCGCuGaCGCGGcGACCGc- -3'
miRNA:   3'- aaGGU--UCGGCGuC-GCGCCuUUGGCuc -5'
1597 5' -57.2 NC_001347.2 + 1999 0.66 0.898682
Target:  5'- -gCCAgcGGCgaGCGGCaCGGAGACgGAGg -3'
miRNA:   3'- aaGGU--UCGg-CGUCGcGCCUUUGgCUC- -5'
1597 5' -57.2 NC_001347.2 + 140571 0.66 0.898682
Target:  5'- gUUCCGGGCgGCGGUgcugGCGGggGugguggaCGAGa -3'
miRNA:   3'- -AAGGUUCGgCGUCG----CGCCuuUg------GCUC- -5'
1597 5' -57.2 NC_001347.2 + 228724 0.66 0.898682
Target:  5'- -gCCAccGCCGCGgcggauuuccGCGCGGGggacgggguAGCCGAGu -3'
miRNA:   3'- aaGGUu-CGGCGU----------CGCGCCU---------UUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 13534 0.66 0.892262
Target:  5'- -cCCGGGCCGCcGUGCuGGAgGGCCGc- -3'
miRNA:   3'- aaGGUUCGGCGuCGCG-CCU-UUGGCuc -5'
1597 5' -57.2 NC_001347.2 + 164497 0.66 0.892262
Target:  5'- aUCCAGGCCGUGGUGCaGccAGuuGAGc -3'
miRNA:   3'- aAGGUUCGGCGUCGCGcCu-UUggCUC- -5'
1597 5' -57.2 NC_001347.2 + 195287 0.66 0.892262
Target:  5'- uUUUCGGGCCGUAGCGUgcuGGAuagcgugagcGGCaCGGGg -3'
miRNA:   3'- -AAGGUUCGGCGUCGCG---CCU----------UUG-GCUC- -5'
1597 5' -57.2 NC_001347.2 + 39847 0.67 0.885623
Target:  5'- aUUCCGGGCCGCGugGUGGGuccUCGAGg -3'
miRNA:   3'- -AAGGUUCGGCGUcgCGCCUuu-GGCUC- -5'
1597 5' -57.2 NC_001347.2 + 71654 0.67 0.885623
Target:  5'- aUCCGuGGCCGCGGC-CGGcgGCCu-- -3'
miRNA:   3'- aAGGU-UCGGCGUCGcGCCuuUGGcuc -5'
1597 5' -57.2 NC_001347.2 + 36421 0.67 0.884947
Target:  5'- uUUCCGuguuGCCgacgGCGGCGCGGuccgucgAGACCGGc -3'
miRNA:   3'- -AAGGUu---CGG----CGUCGCGCC-------UUUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 84396 0.67 0.874557
Target:  5'- -gUCGGGCCGCGGCagucgcuuaGCcaccaccuggacgggGGGGACCGGGg -3'
miRNA:   3'- aaGGUUCGGCGUCG---------CG---------------CCUUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 79928 0.67 0.856971
Target:  5'- -cCCAAGCUGCcgccGCGCuGGGAA-CGAGg -3'
miRNA:   3'- aaGGUUCGGCGu---CGCG-CCUUUgGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.