miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1597 5' -57.2 NC_001347.2 + 196863 0.68 0.849308
Target:  5'- uUUCuCGAGCUGguGCaGCGGAuucCCGAc -3'
miRNA:   3'- -AAG-GUUCGGCguCG-CGCCUuu-GGCUc -5'
1597 5' -57.2 NC_001347.2 + 91179 0.68 0.849308
Target:  5'- cUCCGAGgaGCAGCGCGccuccuaccaGAAGCUGGa -3'
miRNA:   3'- aAGGUUCggCGUCGCGC----------CUUUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 41167 0.68 0.833424
Target:  5'- aUCC--GCCGCGGCGgUGGcGACUGGGc -3'
miRNA:   3'- aAGGuuCGGCGUCGC-GCCuUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 43086 0.69 0.799614
Target:  5'- aUUCCucGCC-CGGCGcCGGcauGCCGAGg -3'
miRNA:   3'- -AAGGuuCGGcGUCGC-GCCuu-UGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 67995 0.69 0.78181
Target:  5'- -aCCGGGgaucCCGCAGCaguccguugGCGGAGuCCGAGg -3'
miRNA:   3'- aaGGUUC----GGCGUCG---------CGCCUUuGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 185354 0.69 0.78181
Target:  5'- --gCAGGCCGCcGcCGUGGggGCCGcGGa -3'
miRNA:   3'- aagGUUCGGCGuC-GCGCCuuUGGC-UC- -5'
1597 5' -57.2 NC_001347.2 + 2538 0.69 0.772711
Target:  5'- gUCCGGGUCGCGGCGa---GGCUGAGg -3'
miRNA:   3'- aAGGUUCGGCGUCGCgccuUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 135917 0.69 0.763492
Target:  5'- -cCCGGGCCaCGGa-CGGGAACCGGGa -3'
miRNA:   3'- aaGGUUCGGcGUCgcGCCUUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 172244 0.69 0.763492
Target:  5'- cUUCCccaCCGUGGUGCGGAGGCCGc- -3'
miRNA:   3'- -AAGGuucGGCGUCGCGCCUUUGGCuc -5'
1597 5' -57.2 NC_001347.2 + 183591 0.69 0.760705
Target:  5'- gUCCucGGGCuugacgccgguuugCGCAGCGCGGcaGAGCCGAu -3'
miRNA:   3'- aAGG--UUCG--------------GCGUCGCGCC--UUUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 103507 0.69 0.754162
Target:  5'- -gUCAAGCCGUAG-GCGaGAugcuGACCGAGc -3'
miRNA:   3'- aaGGUUCGGCGUCgCGC-CU----UUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 113621 0.71 0.646625
Target:  5'- cUCCAcgucGUCGCAGCGCcggcuGGAGAgCGAGa -3'
miRNA:   3'- aAGGUu---CGGCGUCGCG-----CCUUUgGCUC- -5'
1597 5' -57.2 NC_001347.2 + 77752 0.71 0.646625
Target:  5'- -aCCAAGCCG-AGCGaGGcgGCCGAGc -3'
miRNA:   3'- aaGGUUCGGCgUCGCgCCuuUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 208671 0.72 0.596645
Target:  5'- -gCCAGGUCGCAGgaGCGGu--CCGAGu -3'
miRNA:   3'- aaGGUUCGGCGUCg-CGCCuuuGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 135799 0.72 0.586696
Target:  5'- gUCCAuuCCGCGGCGgGuGGACCGGGa -3'
miRNA:   3'- aAGGUucGGCGUCGCgCcUUUGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 76615 0.73 0.537545
Target:  5'- cUCgCAGGCgGCGGCugcggccgcgGCGGAGGCCGAa -3'
miRNA:   3'- aAG-GUUCGgCGUCG----------CGCCUUUGGCUc -5'
1597 5' -57.2 NC_001347.2 + 77317 0.73 0.527874
Target:  5'- --gUggGCCGCGGCGUGGAugaCGAGg -3'
miRNA:   3'- aagGuuCGGCGUCGCGCCUuugGCUC- -5'
1597 5' -57.2 NC_001347.2 + 192182 0.74 0.476897
Target:  5'- cUCCGgaugagcGGCCGCGGCGCGGGcucggcgucccgccGuCCGAGa -3'
miRNA:   3'- aAGGU-------UCGGCGUCGCGCCU--------------UuGGCUC- -5'
1597 5' -57.2 NC_001347.2 + 112998 0.75 0.462259
Target:  5'- ---gGAGCCGUAGCgGCGGGAACCGcAGc -3'
miRNA:   3'- aaggUUCGGCGUCG-CGCCUUUGGC-UC- -5'
1597 5' -57.2 NC_001347.2 + 99131 0.76 0.392892
Target:  5'- gUUCUugggAAGCCGCGGCGCGcGuacGCCGAGa -3'
miRNA:   3'- -AAGG----UUCGGCGUCGCGC-Cuu-UGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.