Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 35384 | 0.66 | 0.962633 |
Target: 5'- uGGCCGAGg---CGUGGaCCGUcauCGGCGc -3' miRNA: 3'- -CCGGCUCgcuaGCAUC-GGCAu--GUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 191163 | 0.66 | 0.959208 |
Target: 5'- --aCGGGuCGAUCuUGGCCGU-CAGCGc -3' miRNA: 3'- ccgGCUC-GCUAGcAUCGGCAuGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 118461 | 0.66 | 0.961288 |
Target: 5'- cGGCCGGGCGGUUggcucucggugauaGUuGCCGcuguugcUGCGGUg -3' miRNA: 3'- -CCGGCUCGCUAG--------------CAuCGGC-------AUGUCGu -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 85576 | 0.66 | 0.951722 |
Target: 5'- uGGUCGccuucGCGAUCGUGG-CGUGCGuGUAc -3' miRNA: 3'- -CCGGCu----CGCUAGCAUCgGCAUGU-CGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 153983 | 0.66 | 0.9623 |
Target: 5'- cGGUCGucGUGAUCGUuGUCGUcucugucguguucGCGGCGg -3' miRNA: 3'- -CCGGCu-CGCUAGCAuCGGCA-------------UGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 227486 | 0.66 | 0.962633 |
Target: 5'- cGGCCGucgacCGAUCGgaccAGCCG-ACGGUu -3' miRNA: 3'- -CCGGCuc---GCUAGCa---UCGGCaUGUCGu -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 194439 | 0.66 | 0.965854 |
Target: 5'- -cCCGGGCGccucgGUCGaAGCgGUugGGCAc -3' miRNA: 3'- ccGGCUCGC-----UAGCaUCGgCAugUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 122531 | 0.66 | 0.968874 |
Target: 5'- --gCGAGCGGUCG-AGCg--ACAGCAg -3' miRNA: 3'- ccgGCUCGCUAGCaUCGgcaUGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 210498 | 0.66 | 0.968874 |
Target: 5'- uGCCGuuCGGaaUCGUAucGCCGUucgGCAGCGg -3' miRNA: 3'- cCGGCucGCU--AGCAU--CGGCA---UGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 68655 | 0.66 | 0.955572 |
Target: 5'- cGGCCGAgGCGuacgcgcaGUCGgcguacgAGUCGUGCcaGGCGa -3' miRNA: 3'- -CCGGCU-CGC--------UAGCa------UCGGCAUG--UCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 59969 | 0.66 | 0.955572 |
Target: 5'- aGGuuG-GCGGcuUCGUcGGCCGaGCAGCc -3' miRNA: 3'- -CCggCuCGCU--AGCA-UCGGCaUGUCGu -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 56714 | 0.66 | 0.955572 |
Target: 5'- cGCCGcAGCGG-CGgcGgCGgcgGCAGCAg -3' miRNA: 3'- cCGGC-UCGCUaGCauCgGCa--UGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 164014 | 0.66 | 0.968874 |
Target: 5'- cGCCGAGgugcaggaccaCGuugCGgaucacGCCGUACAGCAc -3' miRNA: 3'- cCGGCUC-----------GCua-GCau----CGGCAUGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 97046 | 0.66 | 0.965854 |
Target: 5'- cGGCaCGGGCcuGAUCGUGuGCCuGUACGcCAu -3' miRNA: 3'- -CCG-GCUCG--CUAGCAU-CGG-CAUGUcGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 197938 | 0.67 | 0.938858 |
Target: 5'- cGGUCG-GCGAgUCGaAGCgGUcGCGGCAg -3' miRNA: 3'- -CCGGCuCGCU-AGCaUCGgCA-UGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 198623 | 0.67 | 0.942927 |
Target: 5'- cGGCCGAGCuccuccaGGUUGcgcGCCaccagGUGCAGCGu -3' miRNA: 3'- -CCGGCUCG-------CUAGCau-CGG-----CAUGUCGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 163431 | 0.67 | 0.943368 |
Target: 5'- cGCCGcGGUGGcCGccGCCGUGCAGUc -3' miRNA: 3'- cCGGC-UCGCUaGCauCGGCAUGUCGu -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 218730 | 0.67 | 0.947655 |
Target: 5'- uGCCGA-C-AUCGUAGCCGUACGu-- -3' miRNA: 3'- cCGGCUcGcUAGCAUCGGCAUGUcgu -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 195392 | 0.67 | 0.947655 |
Target: 5'- cGGCCGAGgucuuccaCGG-CG-AGCCGUACAcGUAc -3' miRNA: 3'- -CCGGCUC--------GCUaGCaUCGGCAUGU-CGU- -5' |
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15970 | 3' | -55.7 | NC_004065.1 | + | 118922 | 0.67 | 0.947655 |
Target: 5'- uGCCG-GUGAUCGUGaacgacagguuGCUGUuCGGCAu -3' miRNA: 3'- cCGGCuCGCUAGCAU-----------CGGCAuGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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