miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 195392 0.67 0.947655
Target:  5'- cGGCCGAGgucuuccaCGG-CG-AGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCaUCGGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 119189 0.67 0.945109
Target:  5'- uGGCCguGAGCGAgucuggaggCGU-GCCGUuggccuucgcguaccGCAGCGu -3'
miRNA:   3'- -CCGG--CUCGCUa--------GCAuCGGCA---------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 163431 0.67 0.943368
Target:  5'- cGCCGcGGUGGcCGccGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGCUaGCauCGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 190692 0.68 0.912931
Target:  5'- -aCCGguGGCGGUgGUAGCC-UACAGCc -3'
miRNA:   3'- ccGGC--UCGCUAgCAUCGGcAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 30182 0.68 0.894684
Target:  5'- uGCCugcGGCGGUgGUGGCCGUuCuGCAg -3'
miRNA:   3'- cCGGc--UCGCUAgCAUCGGCAuGuCGU- -5'
15970 3' -55.7 NC_004065.1 + 31907 0.68 0.90707
Target:  5'- gGGCCuGAcGCGGcgCGUcGCCG-ACAGCGu -3'
miRNA:   3'- -CCGG-CU-CGCUa-GCAuCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 67907 0.68 0.918567
Target:  5'- -uCCGAgGUGAUCGUGGaagaCGUGCAGaCGa -3'
miRNA:   3'- ccGGCU-CGCUAGCAUCg---GCAUGUC-GU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 148853 0.68 0.90707
Target:  5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81906 0.68 0.894684
Target:  5'- aGGUCG-GCGuggacGUCGUAGgCGUGguGCAc -3'
miRNA:   3'- -CCGGCuCGC-----UAGCAUCgGCAUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 124982 0.68 0.900987
Target:  5'- cGGCCaGAG-GcgCG-GGUCGUGCAGCGc -3'
miRNA:   3'- -CCGG-CUCgCuaGCaUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 200870 0.68 0.906471
Target:  5'- gGGCgCGGGCGGuggcgaaUCGUcGGUCGUGUAGCGg -3'
miRNA:   3'- -CCG-GCUCGCU-------AGCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 112645 0.69 0.87729
Target:  5'- cGGCCGAGCG-UCGauaUGGCCGaggaauuuaacuuccUgACGGCGg -3'
miRNA:   3'- -CCGGCUCGCuAGC---AUCGGC---------------A-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 34770 0.69 0.874488
Target:  5'- cGCCGGGCcaGAUCGcGGCCGcggUGguGCAc -3'
miRNA:   3'- cCGGCUCG--CUAGCaUCGGC---AUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 30140 0.69 0.874488
Target:  5'- gGGgaGGGCGAccggccgcUCGU-GCUGUGCGGCAc -3'
miRNA:   3'- -CCggCUCGCU--------AGCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 196811 0.69 0.888164
Target:  5'- aGGCggUGGGgGGUCGUGGUCaccUGCGGCAg -3'
miRNA:   3'- -CCG--GCUCgCUAGCAUCGGc--AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 65981 0.69 0.888164
Target:  5'- gGGCUG-GUGAagGU-GCUGUACGGCGu -3'
miRNA:   3'- -CCGGCuCGCUagCAuCGGCAUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.