miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 67907 0.68 0.918567
Target:  5'- -uCCGAgGUGAUCGUGGaagaCGUGCAGaCGa -3'
miRNA:   3'- ccGGCU-CGCUAGCAUCg---GCAUGUC-GU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 203131 0.67 0.929164
Target:  5'- cGGUCGAGCGGccUC-UGGaCCGgcCGGCGg -3'
miRNA:   3'- -CCGGCUCGCU--AGcAUC-GGCauGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104002 0.67 0.929164
Target:  5'- uGGgCGAGCGGcUCGUGGCgcUGgAGCAc -3'
miRNA:   3'- -CCgGCUCGCU-AGCAUCGgcAUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 165266 0.67 0.929164
Target:  5'- aGGUCgGAGCGcUCcuUGGCCG-ACAGCGa -3'
miRNA:   3'- -CCGG-CUCGCuAGc-AUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 8296 0.67 0.933638
Target:  5'- gGGCCGcgguguuAGCGGUCGUguaccucagacGGCCGaACGGa- -3'
miRNA:   3'- -CCGGC-------UCGCUAGCA-----------UCGGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 143648 0.67 0.934124
Target:  5'- aGGCCGAGaccuacccCGA-CGUGGCCG-AgAGCc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCAUCGGCaUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 93049 0.67 0.934124
Target:  5'- cGCCGAGguagucaGAuaUCGUGGCCG-GCAGUc -3'
miRNA:   3'- cCGGCUCg------CU--AGCAUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 128407 0.67 0.934607
Target:  5'- gGGCCGAGCGGcagcggcggCGgcGCCGccaccgagucugagcGCGGCGg -3'
miRNA:   3'- -CCGGCUCGCUa--------GCauCGGCa--------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 197938 0.67 0.938858
Target:  5'- cGGUCG-GCGAgUCGaAGCgGUcGCGGCAg -3'
miRNA:   3'- -CCGGCuCGCU-AGCaUCGgCA-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 31693 0.67 0.938858
Target:  5'- aGCUGAGgggGAUC-UGGCCGUuccGCGGCAu -3'
miRNA:   3'- cCGGCUCg--CUAGcAUCGGCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 151535 0.67 0.938858
Target:  5'- cGGCCGGGCGGugUCG-GGCgCGcuugacGCGGCGc -3'
miRNA:   3'- -CCGGCUCGCU--AGCaUCG-GCa-----UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 105579 0.67 0.938858
Target:  5'- cGCCGucGGCGGgcuUCG-AGUCGcUGCAGCAc -3'
miRNA:   3'- cCGGC--UCGCU---AGCaUCGGC-AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 139595 0.67 0.938858
Target:  5'- uGGCCGcGGCGAUC---GCCGU-UGGCAa -3'
miRNA:   3'- -CCGGC-UCGCUAGcauCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 25978 0.67 0.938858
Target:  5'- cGGCCG-GCGGcaugAGCCaguucGUACAGCAc -3'
miRNA:   3'- -CCGGCuCGCUagcaUCGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 109249 0.67 0.942927
Target:  5'- gGGuuGAGCugccaGAUCGUA-CCGUggaaggaGCGGCAg -3'
miRNA:   3'- -CCggCUCG-----CUAGCAUcGGCA-------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 198623 0.67 0.942927
Target:  5'- cGGCCGAGCuccuccaGGUUGcgcGCCaccagGUGCAGCGu -3'
miRNA:   3'- -CCGGCUCG-------CUAGCau-CGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.