miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 116251 0.67 0.943368
Target:  5'- cGcCCGAGuCGGUCGUcuGCCGccGCGGCu -3'
miRNA:   3'- cC-GGCUC-GCUAGCAu-CGGCa-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 198369 0.67 0.943368
Target:  5'- cGCCGGGUGGUCGgcgucaacGCCGUG-GGCc -3'
miRNA:   3'- cCGGCUCGCUAGCau------CGGCAUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 163431 0.67 0.943368
Target:  5'- cGCCGcGGUGGcCGccGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGCUaGCauCGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 119189 0.67 0.945109
Target:  5'- uGGCCguGAGCGAgucuggaggCGU-GCCGUuggccuucgcguaccGCAGCGu -3'
miRNA:   3'- -CCGG--CUCGCUa--------GCAuCGGCA---------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 121516 0.67 0.947655
Target:  5'- cGGCCGAGCcGUCGcGGUCGUcgACGaggaccacgauGCAg -3'
miRNA:   3'- -CCGGCUCGcUAGCaUCGGCA--UGU-----------CGU- -5'
15970 3' -55.7 NC_004065.1 + 94718 0.67 0.947655
Target:  5'- cGGCuCGAGCGGgcCGaAGUCG-GCGGCGg -3'
miRNA:   3'- -CCG-GCUCGCUa-GCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 91126 0.67 0.947655
Target:  5'- aGGCCGAGUagucggugauggGGUCGUAGaagaCGgGgGGCAg -3'
miRNA:   3'- -CCGGCUCG------------CUAGCAUCg---GCaUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 118922 0.67 0.947655
Target:  5'- uGCCG-GUGAUCGUGaacgacagguuGCUGUuCGGCAu -3'
miRNA:   3'- cCGGCuCGCUAGCAU-----------CGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 122871 0.67 0.947655
Target:  5'- cGGCaGAGCGAgUUGgAGCUGUuCGGCGa -3'
miRNA:   3'- -CCGgCUCGCU-AGCaUCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 153362 0.67 0.947655
Target:  5'- cGCCGAcGCGAUcCGUuucgAGCCGaUGCuGCc -3'
miRNA:   3'- cCGGCU-CGCUA-GCA----UCGGC-AUGuCGu -5'
15970 3' -55.7 NC_004065.1 + 136334 0.67 0.947655
Target:  5'- aGCCGAG-GAggGUAGCCGggaAGCu -3'
miRNA:   3'- cCGGCUCgCUagCAUCGGCaugUCGu -5'
15970 3' -55.7 NC_004065.1 + 218730 0.67 0.947655
Target:  5'- uGCCGA-C-AUCGUAGCCGUACGu-- -3'
miRNA:   3'- cCGGCUcGcUAGCAUCGGCAUGUcgu -5'
15970 3' -55.7 NC_004065.1 + 195392 0.67 0.947655
Target:  5'- cGGCCGAGgucuuccaCGG-CG-AGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCaUCGGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 85576 0.66 0.951722
Target:  5'- uGGUCGccuucGCGAUCGUGG-CGUGCGuGUAc -3'
miRNA:   3'- -CCGGCu----CGCUAGCAUCgGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 59969 0.66 0.955572
Target:  5'- aGGuuG-GCGGcuUCGUcGGCCGaGCAGCc -3'
miRNA:   3'- -CCggCuCGCU--AGCA-UCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 68655 0.66 0.955572
Target:  5'- cGGCCGAgGCGuacgcgcaGUCGgcguacgAGUCGUGCcaGGCGa -3'
miRNA:   3'- -CCGGCU-CGC--------UAGCa------UCGGCAUG--UCGU- -5'
15970 3' -55.7 NC_004065.1 + 56714 0.66 0.955572
Target:  5'- cGCCGcAGCGG-CGgcGgCGgcgGCAGCAg -3'
miRNA:   3'- cCGGC-UCGCUaGCauCgGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 191163 0.66 0.959208
Target:  5'- --aCGGGuCGAUCuUGGCCGU-CAGCGc -3'
miRNA:   3'- ccgGCUC-GCUAGcAUCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 118461 0.66 0.961288
Target:  5'- cGGCCGGGCGGUUggcucucggugauaGUuGCCGcuguugcUGCGGUg -3'
miRNA:   3'- -CCGGCUCGCUAG--------------CAuCGGC-------AUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.