miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 8296 0.67 0.933638
Target:  5'- gGGCCGcgguguuAGCGGUCGUguaccucagacGGCCGaACGGa- -3'
miRNA:   3'- -CCGGC-------UCGCUAGCA-----------UCGGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 203131 0.67 0.929164
Target:  5'- cGGUCGAGCGGccUC-UGGaCCGgcCGGCGg -3'
miRNA:   3'- -CCGGCUCGCU--AGcAUC-GGCauGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104002 0.67 0.929164
Target:  5'- uGGgCGAGCGGcUCGUGGCgcUGgAGCAc -3'
miRNA:   3'- -CCgGCUCGCU-AGCAUCGgcAUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 165266 0.67 0.929164
Target:  5'- aGGUCgGAGCGcUCcuUGGCCG-ACAGCGa -3'
miRNA:   3'- -CCGG-CUCGCuAGc-AUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 67907 0.68 0.918567
Target:  5'- -uCCGAgGUGAUCGUGGaagaCGUGCAGaCGa -3'
miRNA:   3'- ccGGCU-CGCUAGCAUCg---GCAUGUC-GU- -5'
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 190692 0.68 0.912931
Target:  5'- -aCCGguGGCGGUgGUAGCC-UACAGCc -3'
miRNA:   3'- ccGGC--UCGCUAgCAUCGGcAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 31907 0.68 0.90707
Target:  5'- gGGCCuGAcGCGGcgCGUcGCCG-ACAGCGu -3'
miRNA:   3'- -CCGG-CU-CGCUa-GCAuCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 148853 0.68 0.90707
Target:  5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 200870 0.68 0.906471
Target:  5'- gGGCgCGGGCGGuggcgaaUCGUcGGUCGUGUAGCGg -3'
miRNA:   3'- -CCG-GCUCGCU-------AGCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 124982 0.68 0.900987
Target:  5'- cGGCCaGAG-GcgCG-GGUCGUGCAGCGc -3'
miRNA:   3'- -CCGG-CUCgCuaGCaUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 30182 0.68 0.894684
Target:  5'- uGCCugcGGCGGUgGUGGCCGUuCuGCAg -3'
miRNA:   3'- cCGGc--UCGCUAgCAUCGGCAuGuCGU- -5'
15970 3' -55.7 NC_004065.1 + 81906 0.68 0.894684
Target:  5'- aGGUCG-GCGuggacGUCGUAGgCGUGguGCAc -3'
miRNA:   3'- -CCGGCuCGC-----UAGCAUCgGCAUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 166137 0.69 0.888164
Target:  5'- cGGCaGAGaCG-UCGgcGCCGgcgGCAGCGg -3'
miRNA:   3'- -CCGgCUC-GCuAGCauCGGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 65981 0.69 0.888164
Target:  5'- gGGCUG-GUGAagGU-GCUGUACGGCGu -3'
miRNA:   3'- -CCGGCuCGCUagCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 196811 0.69 0.888164
Target:  5'- aGGCggUGGGgGGUCGUGGUCaccUGCGGCAg -3'
miRNA:   3'- -CCG--GCUCgCUAGCAUCGGc--AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 123521 0.69 0.881431
Target:  5'- gGGuCCGGGCuggUGUGGUCGUACAGgGu -3'
miRNA:   3'- -CC-GGCUCGcuaGCAUCGGCAUGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 197526 0.69 0.878679
Target:  5'- cGGCCGcgcgcgguagaaggGGaCGAUCGUAucgcagaaaaacuGCCGUcgGCGGCAc -3'
miRNA:   3'- -CCGGC--------------UC-GCUAGCAU-------------CGGCA--UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.