Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 15970 | 3' | -55.7 | NC_004065.1 | + | 27209 | 0.73 | 0.671773 |
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Target: 5'- uGGC--GGCGGUCGUGGUCG-GCAGCGu -3' miRNA: 3'- -CCGgcUCGCUAGCAUCGGCaUGUCGU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 81202 | 0.74 | 0.622099 |
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Target: 5'- uGGCCGAGCGAg---GGCaUGUugGGCAa -3' miRNA: 3'- -CCGGCUCGCUagcaUCG-GCAugUCGU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 104119 | 0.74 | 0.622099 |
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Target: 5'- uGCCGAGCGGcCG-GGCC-UACAGCAc -3' miRNA: 3'- cCGGCUCGCUaGCaUCGGcAUGUCGU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 67967 | 0.74 | 0.602229 |
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Target: 5'- -aUCGAGCGGUCGUGGC-GUucGCGGCAa -3' miRNA: 3'- ccGGCUCGCUAGCAUCGgCA--UGUCGU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 31840 | 0.75 | 0.592322 |
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Target: 5'- gGGCCGAccacGUGAUCGUGGCCG-ACAaGUu -3' miRNA: 3'- -CCGGCU----CGCUAGCAUCGGCaUGU-CGu -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 164760 | 0.75 | 0.56279 |
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Target: 5'- cGGCCGuGCGGUaCGUGGC-GUGCAGgGa -3' miRNA: 3'- -CCGGCuCGCUA-GCAUCGgCAUGUCgU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 184850 | 0.78 | 0.432508 |
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Target: 5'- cGGCCGAGgGAUCG-AGUCGagcggGCGGCGg -3' miRNA: 3'- -CCGGCUCgCUAGCaUCGGCa----UGUCGU- -5' |
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| 15970 | 3' | -55.7 | NC_004065.1 | + | 33683 | 1.11 | 0.003693 |
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Target: 5'- aGGCCGAGCGAUCGUAGCCGUACAGCAg -3' miRNA: 3'- -CCGGCUCGCUAGCAUCGGCAUGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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