miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 1163 0.7 0.828719
Target:  5'- uGUgGAGCGGUCGcAGUCG-ACAGCu -3'
miRNA:   3'- cCGgCUCGCUAGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 8296 0.67 0.933638
Target:  5'- gGGCCGcgguguuAGCGGUCGUguaccucagacGGCCGaACGGa- -3'
miRNA:   3'- -CCGGC-------UCGCUAGCA-----------UCGGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 25607 0.71 0.767783
Target:  5'- aGGCCGAucuCGAUgGggccuGCCGUGCAGUg -3'
miRNA:   3'- -CCGGCUc--GCUAgCau---CGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 25978 0.67 0.938858
Target:  5'- cGGCCG-GCGGcaugAGCCaguucGUACAGCAc -3'
miRNA:   3'- -CCGGCuCGCUagcaUCGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 27209 0.73 0.671773
Target:  5'- uGGC--GGCGGUCGUGGUCG-GCAGCGu -3'
miRNA:   3'- -CCGgcUCGCUAGCAUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 30140 0.69 0.874488
Target:  5'- gGGgaGGGCGAccggccgcUCGU-GCUGUGCGGCAc -3'
miRNA:   3'- -CCggCUCGCU--------AGCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 30182 0.68 0.894684
Target:  5'- uGCCugcGGCGGUgGUGGCCGUuCuGCAg -3'
miRNA:   3'- cCGGc--UCGCUAgCAUCGGCAuGuCGU- -5'
15970 3' -55.7 NC_004065.1 + 31693 0.67 0.938858
Target:  5'- aGCUGAGgggGAUC-UGGCCGUuccGCGGCAu -3'
miRNA:   3'- cCGGCUCg--CUAGcAUCGGCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 31840 0.75 0.592322
Target:  5'- gGGCCGAccacGUGAUCGUGGCCG-ACAaGUu -3'
miRNA:   3'- -CCGGCU----CGCUAGCAUCGGCaUGU-CGu -5'
15970 3' -55.7 NC_004065.1 + 31907 0.68 0.90707
Target:  5'- gGGCCuGAcGCGGcgCGUcGCCG-ACAGCGu -3'
miRNA:   3'- -CCGG-CU-CGCUa-GCAuCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 33683 1.11 0.003693
Target:  5'- aGGCCGAGCGAUCGUAGCCGUACAGCAg -3'
miRNA:   3'- -CCGGCUCGCUAGCAUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 34770 0.69 0.874488
Target:  5'- cGCCGGGCcaGAUCGcGGCCGcggUGguGCAc -3'
miRNA:   3'- cCGGCUCG--CUAGCaUCGGC---AUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 35384 0.66 0.962633
Target:  5'- uGGCCGAGg---CGUGGaCCGUcauCGGCGc -3'
miRNA:   3'- -CCGGCUCgcuaGCAUC-GGCAu--GUCGU- -5'
15970 3' -55.7 NC_004065.1 + 49562 0.69 0.874488
Target:  5'- cGCCG-GCca-CGUAGCCGUGCAucGCGa -3'
miRNA:   3'- cCGGCuCGcuaGCAUCGGCAUGU--CGU- -5'
15970 3' -55.7 NC_004065.1 + 56714 0.66 0.955572
Target:  5'- cGCCGcAGCGG-CGgcGgCGgcgGCAGCAg -3'
miRNA:   3'- cCGGC-UCGCUaGCauCgGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 59558 0.72 0.749224
Target:  5'- cGCCGAGCGGUCu--GCgGcgGCAGCGa -3'
miRNA:   3'- cCGGCUCGCUAGcauCGgCa-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 59969 0.66 0.955572
Target:  5'- aGGuuG-GCGGcuUCGUcGGCCGaGCAGCc -3'
miRNA:   3'- -CCggCuCGCU--AGCA-UCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 63711 0.7 0.828719
Target:  5'- gGGCCGugaucgccuGGUGGUCGgcGCCGUagacAUAGCc -3'
miRNA:   3'- -CCGGC---------UCGCUAGCauCGGCA----UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 65981 0.69 0.888164
Target:  5'- gGGCUG-GUGAagGU-GCUGUACGGCGu -3'
miRNA:   3'- -CCGGCuCGCUagCAuCGGCAUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.