miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 67907 0.68 0.918567
Target:  5'- -uCCGAgGUGAUCGUGGaagaCGUGCAGaCGa -3'
miRNA:   3'- ccGGCU-CGCUAGCAUCg---GCAUGUC-GU- -5'
15970 3' -55.7 NC_004065.1 + 67967 0.74 0.602229
Target:  5'- -aUCGAGCGGUCGUGGC-GUucGCGGCAa -3'
miRNA:   3'- ccGGCUCGCUAGCAUCGgCA--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 68655 0.66 0.955572
Target:  5'- cGGCCGAgGCGuacgcgcaGUCGgcguacgAGUCGUGCcaGGCGa -3'
miRNA:   3'- -CCGGCU-CGC--------UAGCa------UCGGCAUG--UCGU- -5'
15970 3' -55.7 NC_004065.1 + 79535 0.71 0.794746
Target:  5'- cGGCCGAGCGGgagaaGgcGGUCGaUGCGGCGc -3'
miRNA:   3'- -CCGGCUCGCUag---Ca-UCGGC-AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81202 0.74 0.622099
Target:  5'- uGGCCGAGCGAg---GGCaUGUugGGCAa -3'
miRNA:   3'- -CCGGCUCGCUagcaUCG-GCAugUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81906 0.68 0.894684
Target:  5'- aGGUCG-GCGuggacGUCGUAGgCGUGguGCAc -3'
miRNA:   3'- -CCGGCuCGC-----UAGCAUCgGCAUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 85576 0.66 0.951722
Target:  5'- uGGUCGccuucGCGAUCGUGG-CGUGCGuGUAc -3'
miRNA:   3'- -CCGGCu----CGCUAGCAUCgGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 91126 0.67 0.947655
Target:  5'- aGGCCGAGUagucggugauggGGUCGUAGaagaCGgGgGGCAg -3'
miRNA:   3'- -CCGGCUCG------------CUAGCAUCg---GCaUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 93049 0.67 0.934124
Target:  5'- cGCCGAGguagucaGAuaUCGUGGCCG-GCAGUc -3'
miRNA:   3'- cCGGCUCg------CU--AGCAUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 94718 0.67 0.947655
Target:  5'- cGGCuCGAGCGGgcCGaAGUCG-GCGGCGg -3'
miRNA:   3'- -CCG-GCUCGCUa-GCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 97046 0.66 0.965854
Target:  5'- cGGCaCGGGCcuGAUCGUGuGCCuGUACGcCAu -3'
miRNA:   3'- -CCG-GCUCG--CUAGCAU-CGG-CAUGUcGU- -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 99143 0.71 0.803466
Target:  5'- cGGCCGAcgGCGGUaaacacCGUGGCCGccucCAGCu -3'
miRNA:   3'- -CCGGCU--CGCUA------GCAUCGGCau--GUCGu -5'
15970 3' -55.7 NC_004065.1 + 99664 0.7 0.852452
Target:  5'- aGCCG-GCGGcgCGgcGCCG-ACAGCGu -3'
miRNA:   3'- cCGGCuCGCUa-GCauCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 99984 0.7 0.844721
Target:  5'- gGGCCGcGgGucgucgucuucGUCGUAgccgccgccGCCGUACAGCAu -3'
miRNA:   3'- -CCGGCuCgC-----------UAGCAU---------CGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104002 0.67 0.929164
Target:  5'- uGGgCGAGCGGcUCGUGGCgcUGgAGCAc -3'
miRNA:   3'- -CCgGCUCGCU-AGCAUCGgcAUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104119 0.74 0.622099
Target:  5'- uGCCGAGCGGcCG-GGCC-UACAGCAc -3'
miRNA:   3'- cCGGCUCGCUaGCaUCGGcAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104897 0.7 0.828719
Target:  5'- cGGCUGGGCGA-CGgcGCgGUGguGCc -3'
miRNA:   3'- -CCGGCUCGCUaGCauCGgCAUguCGu -5'
15970 3' -55.7 NC_004065.1 + 105579 0.67 0.938858
Target:  5'- cGCCGucGGCGGgcuUCG-AGUCGcUGCAGCAc -3'
miRNA:   3'- cCGGC--UCGCU---AGCaUCGGC-AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 109249 0.67 0.942927
Target:  5'- gGGuuGAGCugccaGAUCGUA-CCGUggaaggaGCGGCAg -3'
miRNA:   3'- -CCggCUCG-----CUAGCAUcGGCA-------UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.