miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 112645 0.69 0.87729
Target:  5'- cGGCCGAGCG-UCGauaUGGCCGaggaauuuaacuuccUgACGGCGg -3'
miRNA:   3'- -CCGGCUCGCuAGC---AUCGGC---------------A-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 116251 0.67 0.943368
Target:  5'- cGcCCGAGuCGGUCGUcuGCCGccGCGGCu -3'
miRNA:   3'- cC-GGCUC-GCUAGCAu-CGGCa-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 118461 0.66 0.961288
Target:  5'- cGGCCGGGCGGUUggcucucggugauaGUuGCCGcuguugcUGCGGUg -3'
miRNA:   3'- -CCGGCUCGCUAG--------------CAuCGGC-------AUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 118922 0.67 0.947655
Target:  5'- uGCCG-GUGAUCGUGaacgacagguuGCUGUuCGGCAu -3'
miRNA:   3'- cCGGCuCGCUAGCAU-----------CGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 119189 0.67 0.945109
Target:  5'- uGGCCguGAGCGAgucuggaggCGU-GCCGUuggccuucgcguaccGCAGCGu -3'
miRNA:   3'- -CCGG--CUCGCUa--------GCAuCGGCA---------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 121516 0.67 0.947655
Target:  5'- cGGCCGAGCcGUCGcGGUCGUcgACGaggaccacgauGCAg -3'
miRNA:   3'- -CCGGCUCGcUAGCaUCGGCA--UGU-----------CGU- -5'
15970 3' -55.7 NC_004065.1 + 122531 0.66 0.968874
Target:  5'- --gCGAGCGGUCG-AGCg--ACAGCAg -3'
miRNA:   3'- ccgGCUCGCUAGCaUCGgcaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 122871 0.67 0.947655
Target:  5'- cGGCaGAGCGAgUUGgAGCUGUuCGGCGa -3'
miRNA:   3'- -CCGgCUCGCU-AGCaUCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 123521 0.69 0.881431
Target:  5'- gGGuCCGGGCuggUGUGGUCGUACAGgGu -3'
miRNA:   3'- -CC-GGCUCGcuaGCAUCGGCAUGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 124982 0.68 0.900987
Target:  5'- cGGCCaGAG-GcgCG-GGUCGUGCAGCGc -3'
miRNA:   3'- -CCGG-CUCgCuaGCaUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 128407 0.67 0.934607
Target:  5'- gGGCCGAGCGGcagcggcggCGgcGCCGccaccgagucugagcGCGGCGg -3'
miRNA:   3'- -CCGGCUCGCUa--------GCauCGGCa--------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 136334 0.67 0.947655
Target:  5'- aGCCGAG-GAggGUAGCCGggaAGCu -3'
miRNA:   3'- cCGGCUCgCUagCAUCGGCaugUCGu -5'
15970 3' -55.7 NC_004065.1 + 139595 0.67 0.938858
Target:  5'- uGGCCGcGGCGAUC---GCCGU-UGGCAa -3'
miRNA:   3'- -CCGGC-UCGCUAGcauCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 143291 0.71 0.794746
Target:  5'- gGGCCGAgGCGGcgUCGggGGCCGggGCAGgAg -3'
miRNA:   3'- -CCGGCU-CGCU--AGCa-UCGGCa-UGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 143648 0.67 0.934124
Target:  5'- aGGCCGAGaccuacccCGA-CGUGGCCG-AgAGCc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCAUCGGCaUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 148853 0.68 0.90707
Target:  5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 151535 0.67 0.938858
Target:  5'- cGGCCGGGCGGugUCG-GGCgCGcuugacGCGGCGc -3'
miRNA:   3'- -CCGGCUCGCU--AGCaUCG-GCa-----UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 153362 0.67 0.947655
Target:  5'- cGCCGAcGCGAUcCGUuucgAGCCGaUGCuGCc -3'
miRNA:   3'- cCGGCU-CGCUA-GCA----UCGGC-AUGuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.