miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 227486 0.66 0.962633
Target:  5'- cGGCCGucgacCGAUCGgaccAGCCG-ACGGUu -3'
miRNA:   3'- -CCGGCuc---GCUAGCa---UCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 218730 0.67 0.947655
Target:  5'- uGCCGA-C-AUCGUAGCCGUACGu-- -3'
miRNA:   3'- cCGGCUcGcUAGCAUCGGCAUGUcgu -5'
15970 3' -55.7 NC_004065.1 + 210498 0.66 0.968874
Target:  5'- uGCCGuuCGGaaUCGUAucGCCGUucgGCAGCGg -3'
miRNA:   3'- cCGGCucGCU--AGCAU--CGGCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 208011 0.72 0.748285
Target:  5'- uGGCCGgguuagugccggcGGCGAUgaccgucggCGUGGCCGUgGCGGCc -3'
miRNA:   3'- -CCGGC-------------UCGCUA---------GCAUCGGCA-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 205526 0.67 0.943368
Target:  5'- gGGCCG-GCGcUCagGGCCG-GCGGCGg -3'
miRNA:   3'- -CCGGCuCGCuAGcaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 203131 0.67 0.929164
Target:  5'- cGGUCGAGCGGccUC-UGGaCCGgcCGGCGg -3'
miRNA:   3'- -CCGGCUCGCU--AGcAUC-GGCauGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 200870 0.68 0.906471
Target:  5'- gGGCgCGGGCGGuggcgaaUCGUcGGUCGUGUAGCGg -3'
miRNA:   3'- -CCG-GCUCGCU-------AGCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 198623 0.67 0.942927
Target:  5'- cGGCCGAGCuccuccaGGUUGcgcGCCaccagGUGCAGCGu -3'
miRNA:   3'- -CCGGCUCG-------CUAGCau-CGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 198369 0.67 0.943368
Target:  5'- cGCCGGGUGGUCGgcgucaacGCCGUG-GGCc -3'
miRNA:   3'- cCGGCUCGCUAGCau------CGGCAUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 197938 0.67 0.938858
Target:  5'- cGGUCG-GCGAgUCGaAGCgGUcGCGGCAg -3'
miRNA:   3'- -CCGGCuCGCU-AGCaUCGgCA-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 197526 0.69 0.878679
Target:  5'- cGGCCGcgcgcgguagaaggGGaCGAUCGUAucgcagaaaaacuGCCGUcgGCGGCAc -3'
miRNA:   3'- -CCGGC--------------UC-GCUAGCAU-------------CGGCA--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 196811 0.69 0.888164
Target:  5'- aGGCggUGGGgGGUCGUGGUCaccUGCGGCAg -3'
miRNA:   3'- -CCG--GCUCgCUAGCAUCGGc--AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 196303 0.7 0.844721
Target:  5'- gGGCCGAGCcacCGUcGCCaUACAGUAc -3'
miRNA:   3'- -CCGGCUCGcuaGCAuCGGcAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 195596 0.73 0.681647
Target:  5'- cGGCCGuGCGAUCGUGGa-GUccaAUGGCAg -3'
miRNA:   3'- -CCGGCuCGCUAGCAUCggCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 195392 0.67 0.947655
Target:  5'- cGGCCGAGgucuuccaCGG-CG-AGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCaUCGGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 194439 0.66 0.965854
Target:  5'- -cCCGGGCGccucgGUCGaAGCgGUugGGCAc -3'
miRNA:   3'- ccGGCUCGC-----UAGCaUCGgCAugUCGU- -5'
15970 3' -55.7 NC_004065.1 + 192391 0.72 0.730275
Target:  5'- cGGCCGuguccaggacGGUGGccUGUgAGCCGUACAGCAu -3'
miRNA:   3'- -CCGGC----------UCGCUa-GCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 191163 0.66 0.959208
Target:  5'- --aCGGGuCGAUCuUGGCCGU-CAGCGc -3'
miRNA:   3'- ccgGCUC-GCUAGcAUCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 190692 0.68 0.912931
Target:  5'- -aCCGguGGCGGUgGUAGCC-UACAGCc -3'
miRNA:   3'- ccGGC--UCGCUAgCAUCGGcAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 184850 0.78 0.432508
Target:  5'- cGGCCGAGgGAUCG-AGUCGagcggGCGGCGg -3'
miRNA:   3'- -CCGGCUCgCUAGCaUCGGCa----UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.