miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 166137 0.69 0.888164
Target:  5'- cGGCaGAGaCG-UCGgcGCCGgcgGCAGCGg -3'
miRNA:   3'- -CCGgCUC-GCuAGCauCGGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 165266 0.67 0.929164
Target:  5'- aGGUCgGAGCGcUCcuUGGCCG-ACAGCGa -3'
miRNA:   3'- -CCGG-CUCGCuAGc-AUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 164760 0.75 0.56279
Target:  5'- cGGCCGuGCGGUaCGUGGC-GUGCAGgGa -3'
miRNA:   3'- -CCGGCuCGCUA-GCAUCGgCAUGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 164014 0.66 0.968874
Target:  5'- cGCCGAGgugcaggaccaCGuugCGgaucacGCCGUACAGCAc -3'
miRNA:   3'- cCGGCUC-----------GCua-GCau----CGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 163431 0.67 0.943368
Target:  5'- cGCCGcGGUGGcCGccGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGCUaGCauCGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 159968 0.71 0.776896
Target:  5'- aGGaUCGcGGCGAUCGUGGCCGUcuccaccgugACgAGCGa -3'
miRNA:   3'- -CC-GGC-UCGCUAGCAUCGGCA----------UG-UCGU- -5'
15970 3' -55.7 NC_004065.1 + 159284 0.7 0.812041
Target:  5'- cGCCGAGCGGaUGauGCCGUuCAGCGu -3'
miRNA:   3'- cCGGCUCGCUaGCauCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 153983 0.66 0.9623
Target:  5'- cGGUCGucGUGAUCGUuGUCGUcucugucguguucGCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCAuCGGCA-------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 153362 0.67 0.947655
Target:  5'- cGCCGAcGCGAUcCGUuucgAGCCGaUGCuGCc -3'
miRNA:   3'- cCGGCU-CGCUA-GCA----UCGGC-AUGuCGu -5'
15970 3' -55.7 NC_004065.1 + 151535 0.67 0.938858
Target:  5'- cGGCCGGGCGGugUCG-GGCgCGcuugacGCGGCGc -3'
miRNA:   3'- -CCGGCUCGCU--AGCaUCG-GCa-----UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 148853 0.68 0.90707
Target:  5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 143648 0.67 0.934124
Target:  5'- aGGCCGAGaccuacccCGA-CGUGGCCG-AgAGCc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCAUCGGCaUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 143291 0.71 0.794746
Target:  5'- gGGCCGAgGCGGcgUCGggGGCCGggGCAGgAg -3'
miRNA:   3'- -CCGGCU-CGCU--AGCa-UCGGCa-UGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 139595 0.67 0.938858
Target:  5'- uGGCCGcGGCGAUC---GCCGU-UGGCAa -3'
miRNA:   3'- -CCGGC-UCGCUAGcauCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 136334 0.67 0.947655
Target:  5'- aGCCGAG-GAggGUAGCCGggaAGCu -3'
miRNA:   3'- cCGGCUCgCUagCAUCGGCaugUCGu -5'
15970 3' -55.7 NC_004065.1 + 128407 0.67 0.934607
Target:  5'- gGGCCGAGCGGcagcggcggCGgcGCCGccaccgagucugagcGCGGCGg -3'
miRNA:   3'- -CCGGCUCGCUa--------GCauCGGCa--------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 124982 0.68 0.900987
Target:  5'- cGGCCaGAG-GcgCG-GGUCGUGCAGCGc -3'
miRNA:   3'- -CCGG-CUCgCuaGCaUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 123521 0.69 0.881431
Target:  5'- gGGuCCGGGCuggUGUGGUCGUACAGgGu -3'
miRNA:   3'- -CC-GGCUCGcuaGCAUCGGCAUGUCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.