miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 122871 0.67 0.947655
Target:  5'- cGGCaGAGCGAgUUGgAGCUGUuCGGCGa -3'
miRNA:   3'- -CCGgCUCGCU-AGCaUCGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 122531 0.66 0.968874
Target:  5'- --gCGAGCGGUCG-AGCg--ACAGCAg -3'
miRNA:   3'- ccgGCUCGCUAGCaUCGgcaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 121516 0.67 0.947655
Target:  5'- cGGCCGAGCcGUCGcGGUCGUcgACGaggaccacgauGCAg -3'
miRNA:   3'- -CCGGCUCGcUAGCaUCGGCA--UGU-----------CGU- -5'
15970 3' -55.7 NC_004065.1 + 119189 0.67 0.945109
Target:  5'- uGGCCguGAGCGAgucuggaggCGU-GCCGUuggccuucgcguaccGCAGCGu -3'
miRNA:   3'- -CCGG--CUCGCUa--------GCAuCGGCA---------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 118922 0.67 0.947655
Target:  5'- uGCCG-GUGAUCGUGaacgacagguuGCUGUuCGGCAu -3'
miRNA:   3'- cCGGCuCGCUAGCAU-----------CGGCAuGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 118461 0.66 0.961288
Target:  5'- cGGCCGGGCGGUUggcucucggugauaGUuGCCGcuguugcUGCGGUg -3'
miRNA:   3'- -CCGGCUCGCUAG--------------CAuCGGC-------AUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 116251 0.67 0.943368
Target:  5'- cGcCCGAGuCGGUCGUcuGCCGccGCGGCu -3'
miRNA:   3'- cC-GGCUC-GCUAGCAu-CGGCa-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 112645 0.69 0.87729
Target:  5'- cGGCCGAGCG-UCGauaUGGCCGaggaauuuaacuuccUgACGGCGg -3'
miRNA:   3'- -CCGGCUCGCuAGC---AUCGGC---------------A-UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 109249 0.67 0.942927
Target:  5'- gGGuuGAGCugccaGAUCGUA-CCGUggaaggaGCGGCAg -3'
miRNA:   3'- -CCggCUCG-----CUAGCAUcGGCA-------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 105579 0.67 0.938858
Target:  5'- cGCCGucGGCGGgcuUCG-AGUCGcUGCAGCAc -3'
miRNA:   3'- cCGGC--UCGCU---AGCaUCGGC-AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104897 0.7 0.828719
Target:  5'- cGGCUGGGCGA-CGgcGCgGUGguGCc -3'
miRNA:   3'- -CCGGCUCGCUaGCauCGgCAUguCGu -5'
15970 3' -55.7 NC_004065.1 + 104119 0.74 0.622099
Target:  5'- uGCCGAGCGGcCG-GGCC-UACAGCAc -3'
miRNA:   3'- cCGGCUCGCUaGCaUCGGcAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104002 0.67 0.929164
Target:  5'- uGGgCGAGCGGcUCGUGGCgcUGgAGCAc -3'
miRNA:   3'- -CCgGCUCGCU-AGCAUCGgcAUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 99984 0.7 0.844721
Target:  5'- gGGCCGcGgGucgucgucuucGUCGUAgccgccgccGCCGUACAGCAu -3'
miRNA:   3'- -CCGGCuCgC-----------UAGCAU---------CGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 99664 0.7 0.852452
Target:  5'- aGCCG-GCGGcgCGgcGCCG-ACAGCGu -3'
miRNA:   3'- cCGGCuCGCUa-GCauCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 99143 0.71 0.803466
Target:  5'- cGGCCGAcgGCGGUaaacacCGUGGCCGccucCAGCu -3'
miRNA:   3'- -CCGGCU--CGCUA------GCAUCGGCau--GUCGu -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 97046 0.66 0.965854
Target:  5'- cGGCaCGGGCcuGAUCGUGuGCCuGUACGcCAu -3'
miRNA:   3'- -CCG-GCUCG--CUAGCAU-CGG-CAUGUcGU- -5'
15970 3' -55.7 NC_004065.1 + 94718 0.67 0.947655
Target:  5'- cGGCuCGAGCGGgcCGaAGUCG-GCGGCGg -3'
miRNA:   3'- -CCG-GCUCGCUa-GCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 93049 0.67 0.934124
Target:  5'- cGCCGAGguagucaGAuaUCGUGGCCG-GCAGUc -3'
miRNA:   3'- cCGGCUCg------CU--AGCAUCGGCaUGUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.