miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 25978 0.67 0.938858
Target:  5'- cGGCCG-GCGGcaugAGCCaguucGUACAGCAc -3'
miRNA:   3'- -CCGGCuCGCUagcaUCGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 65981 0.69 0.888164
Target:  5'- gGGCUG-GUGAagGU-GCUGUACGGCGu -3'
miRNA:   3'- -CCGGCuCGCUagCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 166137 0.69 0.888164
Target:  5'- cGGCaGAGaCG-UCGgcGCCGgcgGCAGCGg -3'
miRNA:   3'- -CCGgCUC-GCuAGCauCGGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81906 0.68 0.894684
Target:  5'- aGGUCG-GCGuggacGUCGUAGgCGUGguGCAc -3'
miRNA:   3'- -CCGGCuCGC-----UAGCAUCgGCAUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 124982 0.68 0.900987
Target:  5'- cGGCCaGAG-GcgCG-GGUCGUGCAGCGc -3'
miRNA:   3'- -CCGG-CUCgCuaGCaUCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 200870 0.68 0.906471
Target:  5'- gGGCgCGGGCGGuggcgaaUCGUcGGUCGUGUAGCGg -3'
miRNA:   3'- -CCG-GCUCGCU-------AGCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 67907 0.68 0.918567
Target:  5'- -uCCGAgGUGAUCGUGGaagaCGUGCAGaCGa -3'
miRNA:   3'- ccGGCU-CGCUAGCAUCg---GCAUGUC-GU- -5'
15970 3' -55.7 NC_004065.1 + 126518 0.68 0.923979
Target:  5'- cGCCGcGCGAUCGUc-CCGUGCuccaucAGCGu -3'
miRNA:   3'- cCGGCuCGCUAGCAucGGCAUG------UCGU- -5'
15970 3' -55.7 NC_004065.1 + 128407 0.67 0.934607
Target:  5'- gGGCCGAGCGGcagcggcggCGgcGCCGccaccgagucugagcGCGGCGg -3'
miRNA:   3'- -CCGGCUCGCUa--------GCauCGGCa--------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 196811 0.69 0.888164
Target:  5'- aGGCggUGGGgGGUCGUGGUCaccUGCGGCAg -3'
miRNA:   3'- -CCG--GCUCgCUAGCAUCGGc--AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 123521 0.69 0.881431
Target:  5'- gGGuCCGGGCuggUGUGGUCGUACAGgGu -3'
miRNA:   3'- -CC-GGCUCGcuaGCAUCGGCAUGUCgU- -5'
15970 3' -55.7 NC_004065.1 + 197526 0.69 0.878679
Target:  5'- cGGCCGcgcgcgguagaaggGGaCGAUCGUAucgcagaaaaacuGCCGUcgGCGGCAc -3'
miRNA:   3'- -CCGGC--------------UC-GCUAGCAU-------------CGGCA--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 184850 0.78 0.432508
Target:  5'- cGGCCGAGgGAUCG-AGUCGagcggGCGGCGg -3'
miRNA:   3'- -CCGGCUCgCUAGCaUCGGCa----UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81202 0.74 0.622099
Target:  5'- uGGCCGAGCGAg---GGCaUGUugGGCAa -3'
miRNA:   3'- -CCGGCUCGCUagcaUCG-GCAugUCGU- -5'
15970 3' -55.7 NC_004065.1 + 195596 0.73 0.681647
Target:  5'- cGGCCGuGCGAUCGUGGa-GUccaAUGGCAg -3'
miRNA:   3'- -CCGGCuCGCUAGCAUCggCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 25607 0.71 0.767783
Target:  5'- aGGCCGAucuCGAUgGggccuGCCGUGCAGUg -3'
miRNA:   3'- -CCGGCUc--GCUAgCau---CGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 99143 0.71 0.803466
Target:  5'- cGGCCGAcgGCGGUaaacacCGUGGCCGccucCAGCu -3'
miRNA:   3'- -CCGGCU--CGCUA------GCAUCGGCau--GUCGu -5'
15970 3' -55.7 NC_004065.1 + 63711 0.7 0.828719
Target:  5'- gGGCCGugaucgccuGGUGGUCGgcGCCGUagacAUAGCc -3'
miRNA:   3'- -CCGGC---------UCGCUAGCauCGGCA----UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 99984 0.7 0.844721
Target:  5'- gGGCCGcGgGucgucgucuucGUCGUAgccgccgccGCCGUACAGCAu -3'
miRNA:   3'- -CCGGCuCgC-----------UAGCAU---------CGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 49562 0.69 0.874488
Target:  5'- cGCCG-GCca-CGUAGCCGUGCAucGCGa -3'
miRNA:   3'- cCGGCuCGcuaGCAUCGGCAUGU--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.