Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 104897 | 0.7 | 0.828719 |
Target: 5'- cGGCUGGGCGA-CGgcGCgGUGguGCc -3' miRNA: 3'- -CCGGCUCGCUaGCauCGgCAUguCGu -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 196303 | 0.7 | 0.844721 |
Target: 5'- gGGCCGAGCcacCGUcGCCaUACAGUAc -3' miRNA: 3'- -CCGGCUCGcuaGCAuCGGcAUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 99664 | 0.7 | 0.852452 |
Target: 5'- aGCCG-GCGGcgCGgcGCCG-ACAGCGu -3' miRNA: 3'- cCGGCuCGCUa-GCauCGGCaUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 30140 | 0.69 | 0.874488 |
Target: 5'- gGGgaGGGCGAccggccgcUCGU-GCUGUGCGGCAc -3' miRNA: 3'- -CCggCUCGCU--------AGCAuCGGCAUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 34770 | 0.69 | 0.874488 |
Target: 5'- cGCCGGGCcaGAUCGcGGCCGcggUGguGCAc -3' miRNA: 3'- cCGGCUCG--CUAGCaUCGGC---AUguCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 112645 | 0.69 | 0.87729 |
Target: 5'- cGGCCGAGCG-UCGauaUGGCCGaggaauuuaacuuccUgACGGCGg -3' miRNA: 3'- -CCGGCUCGCuAGC---AUCGGC---------------A-UGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 30182 | 0.68 | 0.894684 |
Target: 5'- uGCCugcGGCGGUgGUGGCCGUuCuGCAg -3' miRNA: 3'- cCGGc--UCGCUAgCAUCGGCAuGuCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 31907 | 0.68 | 0.90707 |
Target: 5'- gGGCCuGAcGCGGcgCGUcGCCG-ACAGCGu -3' miRNA: 3'- -CCGG-CU-CGCUa-GCAuCGGCaUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 148853 | 0.68 | 0.90707 |
Target: 5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3' miRNA: 3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 159284 | 0.7 | 0.812041 |
Target: 5'- cGCCGAGCGGaUGauGCCGUuCAGCGu -3' miRNA: 3'- cCGGCUCGCUaGCauCGGCAuGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 143291 | 0.71 | 0.794746 |
Target: 5'- gGGCCGAgGCGGcgUCGggGGCCGggGCAGgAg -3' miRNA: 3'- -CCGGCU-CGCU--AGCa-UCGGCa-UGUCgU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 31840 | 0.75 | 0.592322 |
Target: 5'- gGGCCGAccacGUGAUCGUGGCCG-ACAaGUu -3' miRNA: 3'- -CCGGCU----CGCUAGCAUCGGCaUGU-CGu -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 67967 | 0.74 | 0.602229 |
Target: 5'- -aUCGAGCGGUCGUGGC-GUucGCGGCAa -3' miRNA: 3'- ccGGCUCGCUAGCAUCGgCA--UGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 104119 | 0.74 | 0.622099 |
Target: 5'- uGCCGAGCGGcCG-GGCC-UACAGCAc -3' miRNA: 3'- cCGGCUCGCUaGCaUCGGcAUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 27209 | 0.73 | 0.671773 |
Target: 5'- uGGC--GGCGGUCGUGGUCG-GCAGCGu -3' miRNA: 3'- -CCGgcUCGCUAGCAUCGGCaUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 192391 | 0.72 | 0.730275 |
Target: 5'- cGGCCGuguccaggacGGUGGccUGUgAGCCGUACAGCAu -3' miRNA: 3'- -CCGGC----------UCGCUa-GCA-UCGGCAUGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 208011 | 0.72 | 0.748285 |
Target: 5'- uGGCCGgguuagugccggcGGCGAUgaccgucggCGUGGCCGUgGCGGCc -3' miRNA: 3'- -CCGGC-------------UCGCUA---------GCAUCGGCA-UGUCGu -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 59558 | 0.72 | 0.749224 |
Target: 5'- cGCCGAGCGGUCu--GCgGcgGCAGCGa -3' miRNA: 3'- cCGGCUCGCUAGcauCGgCa-UGUCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 159968 | 0.71 | 0.776896 |
Target: 5'- aGGaUCGcGGCGAUCGUGGCCGUcuccaccgugACgAGCGa -3' miRNA: 3'- -CC-GGC-UCGCUAGCAUCGGCA----------UG-UCGU- -5' |
|||||||
15970 | 3' | -55.7 | NC_004065.1 | + | 79535 | 0.71 | 0.794746 |
Target: 5'- cGGCCGAGCGGgagaaGgcGGUCGaUGCGGCGc -3' miRNA: 3'- -CCGGCUCGCUag---Ca-UCGGC-AUGUCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home