miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 190692 0.68 0.912931
Target:  5'- -aCCGguGGCGGUgGUAGCC-UACAGCc -3'
miRNA:   3'- ccGGC--UCGCUAgCAUCGGcAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 148853 0.68 0.90707
Target:  5'- cGGCCGccGCGAUCGaggAGgCG-GCGGCGg -3'
miRNA:   3'- -CCGGCu-CGCUAGCa--UCgGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 1163 0.7 0.828719
Target:  5'- uGUgGAGCGGUCGcAGUCG-ACAGCu -3'
miRNA:   3'- cCGgCUCGCUAGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 192391 0.72 0.730275
Target:  5'- cGGCCGuguccaggacGGUGGccUGUgAGCCGUACAGCAu -3'
miRNA:   3'- -CCGGC----------UCGCUa-GCA-UCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 109249 0.67 0.942927
Target:  5'- gGGuuGAGCugccaGAUCGUA-CCGUggaaggaGCGGCAg -3'
miRNA:   3'- -CCggCUCG-----CUAGCAUcGGCA-------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 203131 0.67 0.929164
Target:  5'- cGGUCGAGCGGccUC-UGGaCCGgcCGGCGg -3'
miRNA:   3'- -CCGGCUCGCU--AGcAUC-GGCauGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 30182 0.68 0.894684
Target:  5'- uGCCugcGGCGGUgGUGGCCGUuCuGCAg -3'
miRNA:   3'- cCGGc--UCGCUAgCAUCGGCAuGuCGU- -5'
15970 3' -55.7 NC_004065.1 + 27209 0.73 0.671773
Target:  5'- uGGC--GGCGGUCGUGGUCG-GCAGCGu -3'
miRNA:   3'- -CCGgcUCGCUAGCAUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104002 0.67 0.929164
Target:  5'- uGGgCGAGCGGcUCGUGGCgcUGgAGCAc -3'
miRNA:   3'- -CCgGCUCGCU-AGCAUCGgcAUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104119 0.74 0.622099
Target:  5'- uGCCGAGCGGcCG-GGCC-UACAGCAc -3'
miRNA:   3'- cCGGCUCGCUaGCaUCGGcAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 31907 0.68 0.90707
Target:  5'- gGGCCuGAcGCGGcgCGUcGCCG-ACAGCGu -3'
miRNA:   3'- -CCGG-CU-CGCUa-GCAuCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 30140 0.69 0.874488
Target:  5'- gGGgaGGGCGAccggccgcUCGU-GCUGUGCGGCAc -3'
miRNA:   3'- -CCggCUCGCU--------AGCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 104897 0.7 0.828719
Target:  5'- cGGCUGGGCGA-CGgcGCgGUGguGCc -3'
miRNA:   3'- -CCGGCUCGCUaGCauCGgCAUguCGu -5'
15970 3' -55.7 NC_004065.1 + 79535 0.71 0.794746
Target:  5'- cGGCCGAGCGGgagaaGgcGGUCGaUGCGGCGc -3'
miRNA:   3'- -CCGGCUCGCUag---Ca-UCGGC-AUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 208011 0.72 0.748285
Target:  5'- uGGCCGgguuagugccggcGGCGAUgaccgucggCGUGGCCGUgGCGGCc -3'
miRNA:   3'- -CCGGC-------------UCGCUA---------GCAUCGGCA-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 91126 0.67 0.947655
Target:  5'- aGGCCGAGUagucggugauggGGUCGUAGaagaCGgGgGGCAg -3'
miRNA:   3'- -CCGGCUCG------------CUAGCAUCg---GCaUgUCGU- -5'
15970 3' -55.7 NC_004065.1 + 198369 0.67 0.943368
Target:  5'- cGCCGGGUGGUCGgcgucaacGCCGUG-GGCc -3'
miRNA:   3'- cCGGCUCGCUAGCau------CGGCAUgUCGu -5'
15970 3' -55.7 NC_004065.1 + 31693 0.67 0.938858
Target:  5'- aGCUGAGgggGAUC-UGGCCGUuccGCGGCAu -3'
miRNA:   3'- cCGGCUCg--CUAGcAUCGGCA---UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 8296 0.67 0.933638
Target:  5'- gGGCCGcgguguuAGCGGUCGUguaccucagacGGCCGaACGGa- -3'
miRNA:   3'- -CCGGC-------UCGCUAGCA-----------UCGGCaUGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.