miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15970 3' -55.7 NC_004065.1 + 85576 0.66 0.951722
Target:  5'- uGGUCGccuucGCGAUCGUGG-CGUGCGuGUAc -3'
miRNA:   3'- -CCGGCu----CGCUAGCAUCgGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 6160 0.68 0.912931
Target:  5'- cGGCCGAGaUGGcCG-GGCCGgGCGGCc -3'
miRNA:   3'- -CCGGCUC-GCUaGCaUCGGCaUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 97046 0.66 0.965854
Target:  5'- cGGCaCGGGCcuGAUCGUGuGCCuGUACGcCAu -3'
miRNA:   3'- -CCG-GCUCG--CUAGCAU-CGG-CAUGUcGU- -5'
15970 3' -55.7 NC_004065.1 + 139861 0.68 0.923979
Target:  5'- cGGCgGAgGCGG-CGgAGCCG-GCGGCAg -3'
miRNA:   3'- -CCGgCU-CGCUaGCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 94718 0.67 0.947655
Target:  5'- cGGCuCGAGCGGgcCGaAGUCG-GCGGCGg -3'
miRNA:   3'- -CCG-GCUCGCUa-GCaUCGGCaUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 121516 0.67 0.947655
Target:  5'- cGGCCGAGCcGUCGcGGUCGUcgACGaggaccacgauGCAg -3'
miRNA:   3'- -CCGGCUCGcUAGCaUCGGCA--UGU-----------CGU- -5'
15970 3' -55.7 NC_004065.1 + 164014 0.66 0.968874
Target:  5'- cGCCGAGgugcaggaccaCGuugCGgaucacGCCGUACAGCAc -3'
miRNA:   3'- cCGGCUC-----------GCua-GCau----CGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 116251 0.67 0.943368
Target:  5'- cGcCCGAGuCGGUCGUcuGCCGccGCGGCu -3'
miRNA:   3'- cC-GGCUC-GCUAGCAu-CGGCa-UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 35384 0.66 0.962633
Target:  5'- uGGCCGAGg---CGUGGaCCGUcauCGGCGc -3'
miRNA:   3'- -CCGGCUCgcuaGCAUC-GGCAu--GUCGU- -5'
15970 3' -55.7 NC_004065.1 + 63711 0.7 0.828719
Target:  5'- gGGCCGugaucgccuGGUGGUCGgcGCCGUagacAUAGCc -3'
miRNA:   3'- -CCGGC---------UCGCUAGCauCGGCA----UGUCGu -5'
15970 3' -55.7 NC_004065.1 + 56714 0.66 0.955572
Target:  5'- cGCCGcAGCGG-CGgcGgCGgcgGCAGCAg -3'
miRNA:   3'- cCGGC-UCGCUaGCauCgGCa--UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 65981 0.69 0.888164
Target:  5'- gGGCUG-GUGAagGU-GCUGUACGGCGu -3'
miRNA:   3'- -CCGGCuCGCUagCAuCGGCAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 218730 0.67 0.947655
Target:  5'- uGCCGA-C-AUCGUAGCCGUACGu-- -3'
miRNA:   3'- cCGGCUcGcUAGCAUCGGCAUGUcgu -5'
15970 3' -55.7 NC_004065.1 + 195392 0.67 0.947655
Target:  5'- cGGCCGAGgucuuccaCGG-CG-AGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC--------GCUaGCaUCGGCAUGU-CGU- -5'
15970 3' -55.7 NC_004065.1 + 119189 0.67 0.945109
Target:  5'- uGGCCguGAGCGAgucuggaggCGU-GCCGUuggccuucgcguaccGCAGCGu -3'
miRNA:   3'- -CCGG--CUCGCUa--------GCAuCGGCA---------------UGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 163431 0.67 0.943368
Target:  5'- cGCCGcGGUGGcCGccGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGCUaGCauCGGCAUGUCGu -5'
15970 3' -55.7 NC_004065.1 + 98802 0.67 0.943368
Target:  5'- aGGCCGGGUGccagCGUGGgCCGgACGGa- -3'
miRNA:   3'- -CCGGCUCGCua--GCAUC-GGCaUGUCgu -5'
15970 3' -55.7 NC_004065.1 + 198623 0.67 0.942927
Target:  5'- cGGCCGAGCuccuccaGGUUGcgcGCCaccagGUGCAGCGu -3'
miRNA:   3'- -CCGGCUCG-------CUAGCau-CGG-----CAUGUCGU- -5'
15970 3' -55.7 NC_004065.1 + 81906 0.68 0.894684
Target:  5'- aGGUCG-GCGuggacGUCGUAGgCGUGguGCAc -3'
miRNA:   3'- -CCGGCuCGC-----UAGCAUCgGCAUguCGU- -5'
15970 3' -55.7 NC_004065.1 + 166137 0.69 0.888164
Target:  5'- cGGCaGAGaCG-UCGgcGCCGgcgGCAGCGg -3'
miRNA:   3'- -CCGgCUC-GCuAGCauCGGCa--UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.