miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 155243 0.66 0.760819
Target:  5'- cGCGAGCGCuGCCGCgagaCUCC-CUGCg- -3'
miRNA:   3'- uCGUUCGUG-CGGUGg---GAGGcGGCGag -5'
15972 3' -61.6 NC_004065.1 + 182863 0.66 0.760819
Target:  5'- aGGUgcGCccguuuCGCCACgCCUUCGCCcacgaGCUCg -3'
miRNA:   3'- -UCGuuCGu-----GCGGUG-GGAGGCGG-----CGAG- -5'
15972 3' -61.6 NC_004065.1 + 62670 0.66 0.760818
Target:  5'- cGGC-AGCG-GCgACCCUgucugCCGCCGCg- -3'
miRNA:   3'- -UCGuUCGUgCGgUGGGA-----GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 100026 0.66 0.760818
Target:  5'- cAGCAucGCcucgucCGCCGCCC-CCGCgGCg- -3'
miRNA:   3'- -UCGUu-CGu-----GCGGUGGGaGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 24589 0.66 0.760818
Target:  5'- cGCGuGUcguCGCCGCCaccgCCGCCGC-Cg -3'
miRNA:   3'- uCGUuCGu--GCGGUGGga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 87416 0.66 0.759914
Target:  5'- cGCAcuGCAUGCCgaagcgcACCgCUUCGCUGCUg -3'
miRNA:   3'- uCGUu-CGUGCGG-------UGG-GAGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 155106 0.66 0.759914
Target:  5'- aGGCcAGCucccccuGCGUCGCCUUCCuCCGCg- -3'
miRNA:   3'- -UCGuUCG-------UGCGGUGGGAGGcGGCGag -5'
15972 3' -61.6 NC_004065.1 + 92432 0.66 0.755377
Target:  5'- gGGCGGGCAgggcguUGCCaugguuacaugucccGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU------GCGG---------------UGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 150482 0.66 0.751731
Target:  5'- uGCGccGCAuCGaCCGCCUUCUcCCGCUCg -3'
miRNA:   3'- uCGUu-CGU-GC-GGUGGGAGGcGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 50332 0.66 0.751731
Target:  5'- uGguGGCACGCgugGCCa-CCGCCGCg- -3'
miRNA:   3'- uCguUCGUGCGg--UGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 73692 0.66 0.751731
Target:  5'- uGCugcuGC-CGCCGCuuccuccuCCUCCGCCGCn- -3'
miRNA:   3'- uCGuu--CGuGCGGUG--------GGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 152954 0.66 0.751731
Target:  5'- cGGCAGGCACaGCuCGCggaUCUCgGCCGUg- -3'
miRNA:   3'- -UCGUUCGUG-CG-GUG---GGAGgCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 202510 0.66 0.751731
Target:  5'- uGgAGGCACGCCGCgaugaaucuggCgUCCuGaCCGCUCa -3'
miRNA:   3'- uCgUUCGUGCGGUG-----------GgAGG-C-GGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 205724 0.66 0.751731
Target:  5'- uGCcGGUGCGUCGCCCcaucaUCUGUCGCg- -3'
miRNA:   3'- uCGuUCGUGCGGUGGG-----AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 204472 0.66 0.751731
Target:  5'- aGGCGcggGGCcgACGCCgacGCCgUCUGUCGCUUu -3'
miRNA:   3'- -UCGU---UCG--UGCGG---UGGgAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 133444 0.66 0.751731
Target:  5'- uGC-AGCGuCGCCACgCgUCGCgGCUCg -3'
miRNA:   3'- uCGuUCGU-GCGGUGgGaGGCGgCGAG- -5'
15972 3' -61.6 NC_004065.1 + 43335 0.66 0.751731
Target:  5'- cGGCGGGgACGCC-CCacgCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGCGGuGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 59659 0.66 0.751731
Target:  5'- cGGUcucgGAGCACGCCACCUcgUCCucGUCGUcCg -3'
miRNA:   3'- -UCG----UUCGUGCGGUGGG--AGG--CGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 101854 0.66 0.751731
Target:  5'- gGGCGucgGGgGCGCUAUCg-CCGCCGCa- -3'
miRNA:   3'- -UCGU---UCgUGCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 197914 0.66 0.751731
Target:  5'- cGGCGGGCACGUagUCCUCauCGUCGgUCg -3'
miRNA:   3'- -UCGUUCGUGCGguGGGAG--GCGGCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.