miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 135625 0.66 0.733279
Target:  5'- cGCGGGUcuacgGCGCCACCagCCGacaGCUCg -3'
miRNA:   3'- uCGUUCG-----UGCGGUGGgaGGCgg-CGAG- -5'
15972 3' -61.6 NC_004065.1 + 73692 0.66 0.751731
Target:  5'- uGCugcuGC-CGCCGCuuccuccuCCUCCGCCGCn- -3'
miRNA:   3'- uCGuu--CGuGCGGUG--------GGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 54475 0.66 0.750816
Target:  5'- cGCGAGCGCacgcgcaGCCA-CCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUG-------CGGUgGGAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 191548 0.66 0.72393
Target:  5'- cAGCAAGgGCgGCuCACuCUUCCGCaCGCg- -3'
miRNA:   3'- -UCGUUCgUG-CG-GUG-GGAGGCG-GCGag -5'
15972 3' -61.6 NC_004065.1 + 135317 0.66 0.714511
Target:  5'- cGGCccGCucgaGCCGCCCUCCaaggucagggGCCGCg- -3'
miRNA:   3'- -UCGuuCGug--CGGUGGGAGG----------CGGCGag -5'
15972 3' -61.6 NC_004065.1 + 102532 0.66 0.714511
Target:  5'- cAGgGAGCugGacaaCGCUC-CCGCCGCg- -3'
miRNA:   3'- -UCgUUCGugCg---GUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 89199 0.66 0.742548
Target:  5'- gAGCAGGCAguccggcuggaUGuCCACCa--CGUCGCUCu -3'
miRNA:   3'- -UCGUUCGU-----------GC-GGUGGgagGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 225643 0.66 0.72393
Target:  5'- cAGCAcuccGGCuccCGCCGCCg-CCGUCGCg- -3'
miRNA:   3'- -UCGU----UCGu--GCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 45521 0.66 0.714511
Target:  5'- cGGacGGUcuACGCCACCCggCGCCGCg- -3'
miRNA:   3'- -UCguUCG--UGCGGUGGGagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 86696 0.66 0.72393
Target:  5'- cGCccuGC-CGCCGCCC-CCGCCccCUCu -3'
miRNA:   3'- uCGuu-CGuGCGGUGGGaGGCGGc-GAG- -5'
15972 3' -61.6 NC_004065.1 + 43335 0.66 0.751731
Target:  5'- cGGCGGGgACGCC-CCacgCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGCGGuGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 142410 0.66 0.733279
Target:  5'- cGCGGGCcaucuuuCGCCugCCggCgCGCCgGCUCc -3'
miRNA:   3'- uCGUUCGu------GCGGugGGa-G-GCGG-CGAG- -5'
15972 3' -61.6 NC_004065.1 + 229362 0.66 0.712619
Target:  5'- cAGCGAGCgggugcucgcuacGCGCggccggacgcacuCACCCacaUCCGCCGCc- -3'
miRNA:   3'- -UCGUUCG-------------UGCG-------------GUGGG---AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 163419 0.66 0.72393
Target:  5'- gAGCGucGGCaACGCCGCgguggCCGCCGC-Cg -3'
miRNA:   3'- -UCGU--UCG-UGCGGUGgga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 150482 0.66 0.751731
Target:  5'- uGCGccGCAuCGaCCGCCUUCUcCCGCUCg -3'
miRNA:   3'- uCGUu-CGU-GC-GGUGGGAGGcGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 50332 0.66 0.751731
Target:  5'- uGguGGCACGCgugGCCa-CCGCCGCg- -3'
miRNA:   3'- uCguUCGUGCGg--UGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 155243 0.66 0.760819
Target:  5'- cGCGAGCGCuGCCGCgagaCUCC-CUGCg- -3'
miRNA:   3'- uCGUUCGUG-CGGUGg---GAGGcGGCGag -5'
15972 3' -61.6 NC_004065.1 + 133597 0.66 0.742548
Target:  5'- -cCAGGUAUauaaGuCCGCCgUgCCGCCGCUCg -3'
miRNA:   3'- ucGUUCGUG----C-GGUGGgA-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 197914 0.66 0.751731
Target:  5'- cGGCGGGCACGUagUCCUCauCGUCGgUCg -3'
miRNA:   3'- -UCGUUCGUGCGguGGGAG--GCGGCgAG- -5'
15972 3' -61.6 NC_004065.1 + 59659 0.66 0.751731
Target:  5'- cGGUcucgGAGCACGCCACCUcgUCCucGUCGUcCg -3'
miRNA:   3'- -UCG----UUCGUGCGGUGGG--AGG--CGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.