miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 90330 0.66 0.723931
Target:  5'- cGGCAAGCGCGUCcgcgaACUCgUCCGCguCGCg- -3'
miRNA:   3'- -UCGUUCGUGCGG-----UGGG-AGGCG--GCGag -5'
15972 3' -61.6 NC_004065.1 + 63289 0.66 0.723931
Target:  5'- cGGCGAGCuccCGCUGCCCaUCGa-GCUCa -3'
miRNA:   3'- -UCGUUCGu--GCGGUGGGaGGCggCGAG- -5'
15972 3' -61.6 NC_004065.1 + 87645 0.66 0.733279
Target:  5'- cGCGAacuGCGCGCCuucgacACCC-CCGaCCGCa- -3'
miRNA:   3'- uCGUU---CGUGCGG------UGGGaGGC-GGCGag -5'
15972 3' -61.6 NC_004065.1 + 101854 0.66 0.751731
Target:  5'- gGGCGucgGGgGCGCUAUCg-CCGCCGCa- -3'
miRNA:   3'- -UCGU---UCgUGCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 127884 0.66 0.723931
Target:  5'- cGGuCGAGcCGgGUCugCCUCCGCaCGCa- -3'
miRNA:   3'- -UC-GUUC-GUgCGGugGGAGGCG-GCGag -5'
15972 3' -61.6 NC_004065.1 + 101430 0.66 0.733279
Target:  5'- cGGCuGGCGCGUgcggaUGCgCCUUCGCCGC-Cg -3'
miRNA:   3'- -UCGuUCGUGCG-----GUG-GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 92432 0.66 0.755377
Target:  5'- gGGCGGGCAgggcguUGCCaugguuacaugucccGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU------GCGG---------------UGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 54475 0.66 0.750816
Target:  5'- cGCGAGCGCacgcgcaGCCA-CCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUG-------CGGUgGGAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 135625 0.66 0.733279
Target:  5'- cGCGGGUcuacgGCGCCACCagCCGacaGCUCg -3'
miRNA:   3'- uCGUUCG-----UGCGGUGGgaGGCgg-CGAG- -5'
15972 3' -61.6 NC_004065.1 + 43335 0.66 0.751731
Target:  5'- cGGCGGGgACGCC-CCacgCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGCGGuGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 100026 0.66 0.760818
Target:  5'- cAGCAucGCcucgucCGCCGCCC-CCGCgGCg- -3'
miRNA:   3'- -UCGUu-CGu-----GCGGUGGGaGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 29232 0.66 0.733279
Target:  5'- cGcCGAGaCGcCGUCGCCCgccaCCGCCGCg- -3'
miRNA:   3'- uC-GUUC-GU-GCGGUGGGa---GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 102358 0.66 0.713565
Target:  5'- uGCAacaacgugaacauGGUccCGCCGCCCUCggCGCCGCa- -3'
miRNA:   3'- uCGU-------------UCGu-GCGGUGGGAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 115423 0.66 0.723931
Target:  5'- uAGCGAGgGCGauaCCAgCCCucguagggcacUCCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGC---GGU-GGG-----------AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 24589 0.66 0.760818
Target:  5'- cGCGuGUcguCGCCGCCaccgCCGCCGC-Cg -3'
miRNA:   3'- uCGUuCGu--GCGGUGGga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 103894 0.66 0.714511
Target:  5'- cGC-AGCACGCCgACCgcaUCCaGCagaGCUCg -3'
miRNA:   3'- uCGuUCGUGCGG-UGGg--AGG-CGg--CGAG- -5'
15972 3' -61.6 NC_004065.1 + 62670 0.66 0.760818
Target:  5'- cGGC-AGCG-GCgACCCUgucugCCGCCGCg- -3'
miRNA:   3'- -UCGuUCGUgCGgUGGGA-----GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 115204 0.66 0.723931
Target:  5'- gAGUcGGCGCuCC-CUCUCUGCCGCg- -3'
miRNA:   3'- -UCGuUCGUGcGGuGGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 196755 0.66 0.733279
Target:  5'- cGGCGuGCuGCGCCugCCcaagaUCCGCCacCUCa -3'
miRNA:   3'- -UCGUuCG-UGCGGugGG-----AGGCGGc-GAG- -5'
15972 3' -61.6 NC_004065.1 + 155243 0.66 0.760819
Target:  5'- cGCGAGCGCuGCCGCgagaCUCC-CUGCg- -3'
miRNA:   3'- uCGUUCGUG-CGGUGg---GAGGcGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.