miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 225643 0.66 0.72393
Target:  5'- cAGCAcuccGGCuccCGCCGCCg-CCGUCGCg- -3'
miRNA:   3'- -UCGU----UCGu--GCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 150482 0.66 0.751731
Target:  5'- uGCGccGCAuCGaCCGCCUUCUcCCGCUCg -3'
miRNA:   3'- uCGUu-CGU-GC-GGUGGGAGGcGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 142410 0.66 0.733279
Target:  5'- cGCGGGCcaucuuuCGCCugCCggCgCGCCgGCUCc -3'
miRNA:   3'- uCGUUCGu------GCGGugGGa-G-GCGG-CGAG- -5'
15972 3' -61.6 NC_004065.1 + 100026 0.66 0.760818
Target:  5'- cAGCAucGCcucgucCGCCGCCC-CCGCgGCg- -3'
miRNA:   3'- -UCGUu-CGu-----GCGGUGGGaGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 62670 0.66 0.760818
Target:  5'- cGGC-AGCG-GCgACCCUgucugCCGCCGCg- -3'
miRNA:   3'- -UCGuUCGUgCGgUGGGA-----GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 24589 0.66 0.760818
Target:  5'- cGCGuGUcguCGCCGCCaccgCCGCCGC-Cg -3'
miRNA:   3'- uCGUuCGu--GCGGUGGga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 92432 0.66 0.755377
Target:  5'- gGGCGGGCAgggcguUGCCaugguuacaugucccGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU------GCGG---------------UGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 101854 0.66 0.751731
Target:  5'- gGGCGucgGGgGCGCUAUCg-CCGCCGCa- -3'
miRNA:   3'- -UCGU---UCgUGCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 59659 0.66 0.751731
Target:  5'- cGGUcucgGAGCACGCCACCUcgUCCucGUCGUcCg -3'
miRNA:   3'- -UCG----UUCGUGCGGUGGG--AGG--CGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 43335 0.66 0.751731
Target:  5'- cGGCGGGgACGCC-CCacgCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGCGGuGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 54475 0.66 0.750816
Target:  5'- cGCGAGCGCacgcgcaGCCA-CCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUG-------CGGUgGGAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 133597 0.66 0.742548
Target:  5'- -cCAGGUAUauaaGuCCGCCgUgCCGCCGCUCg -3'
miRNA:   3'- ucGUUCGUG----C-GGUGGgA-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 89199 0.66 0.742548
Target:  5'- gAGCAGGCAguccggcuggaUGuCCACCa--CGUCGCUCu -3'
miRNA:   3'- -UCGUUCGU-----------GC-GGUGGgagGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 135625 0.66 0.733279
Target:  5'- cGCGGGUcuacgGCGCCACCagCCGacaGCUCg -3'
miRNA:   3'- uCGUUCG-----UGCGGUGGgaGGCgg-CGAG- -5'
15972 3' -61.6 NC_004065.1 + 98964 0.66 0.714511
Target:  5'- uGCAAGUuaaagaccGCGCCGCUCUUaguaucccggCGCCGC-Ca -3'
miRNA:   3'- uCGUUCG--------UGCGGUGGGAG----------GCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 68169 0.67 0.685903
Target:  5'- cGGCGGcGCGCGCgACggagcugucggCC-CCGCCGCUg -3'
miRNA:   3'- -UCGUU-CGUGCGgUG-----------GGaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 96973 0.67 0.685903
Target:  5'- cGCcuGCuGCGCCgGCCgUCCGUCGCg- -3'
miRNA:   3'- uCGuuCG-UGCGG-UGGgAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 46659 0.67 0.676277
Target:  5'- cGGCGAGCGCGCUcugcucgauACUCUacaCCGCCuacaCUCa -3'
miRNA:   3'- -UCGUUCGUGCGG---------UGGGA---GGCGGc---GAG- -5'
15972 3' -61.6 NC_004065.1 + 182681 0.67 0.69549
Target:  5'- uGGCAccucucauGUugGCCAUCCguugccccCCGCCGCg- -3'
miRNA:   3'- -UCGUu-------CGugCGGUGGGa-------GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 163841 0.67 0.69549
Target:  5'- cAGCGaguAGCACGUCGCgCaguguUCCGCgaacCGCUCg -3'
miRNA:   3'- -UCGU---UCGUGCGGUGgG-----AGGCG----GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.