Results 1 - 20 of 189 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 34355 | 1.09 | 0.001205 |
Target: 5'- cAGCAAGCACGCCACCCUCCGCCGCUCg -3' miRNA: 3'- -UCGUUCGUGCGGUGGGAGGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 116585 | 0.79 | 0.144073 |
Target: 5'- gGGCAcGGCGgGCCcCCCggCCGCCGCUCu -3' miRNA: 3'- -UCGU-UCGUgCGGuGGGa-GGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 32774 | 0.76 | 0.242267 |
Target: 5'- cGGCAcccuaucGGCACGCCACCCgcucaucguuucUCCGCgugaUGCUCg -3' miRNA: 3'- -UCGU-------UCGUGCGGUGGG------------AGGCG----GCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 167637 | 0.75 | 0.271981 |
Target: 5'- cGC-GGC-CGCCACCC-CCGCCGC-Ca -3' miRNA: 3'- uCGuUCGuGCGGUGGGaGGCGGCGaG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 66390 | 0.75 | 0.265933 |
Target: 5'- cGCu-GC-CGCCGCCg-CCGCCGCUCg -3' miRNA: 3'- uCGuuCGuGCGGUGGgaGGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 101610 | 0.75 | 0.259993 |
Target: 5'- cGguGGCgGCGCCGCCgCcgCUGCCGCUCg -3' miRNA: 3'- uCguUCG-UGCGGUGG-Ga-GGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 210165 | 0.74 | 0.308578 |
Target: 5'- gGGUcucuAGCACGCCAuucggcagcuucguCCCgacaCCGCCGCUCc -3' miRNA: 3'- -UCGu---UCGUGCGGU--------------GGGa---GGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 162353 | 0.74 | 0.290791 |
Target: 5'- gGGCccGC-CGCCGCCg-CCGCCGCUCc -3' miRNA: 3'- -UCGuuCGuGCGGUGGgaGGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 110387 | 0.74 | 0.308577 |
Target: 5'- cGCAGGCcguucgaacACGCCACggccgacggcgucuCCUCCGCCGC-Cg -3' miRNA: 3'- uCGUUCG---------UGCGGUG--------------GGAGGCGGCGaG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 151386 | 0.73 | 0.338593 |
Target: 5'- uAGUcGGCACGUCGCCCUcgCCGaCCGCg- -3' miRNA: 3'- -UCGuUCGUGCGGUGGGA--GGC-GGCGag -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 159501 | 0.73 | 0.360761 |
Target: 5'- uGCAGGCGCGCCugCagCUCCGUCGa-- -3' miRNA: 3'- uCGUUCGUGCGGugG--GAGGCGGCgag -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 75862 | 0.73 | 0.368371 |
Target: 5'- cAGCAacAGC-CGCCGCCg-CCGCCGC-Cg -3' miRNA: 3'- -UCGU--UCGuGCGGUGGgaGGCGGCGaG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 104132 | 0.73 | 0.345871 |
Target: 5'- uGGCGAGCGgauccucguCGUCGCCUUCCGCgGCg- -3' miRNA: 3'- -UCGUUCGU---------GCGGUGGGAGGCGgCGag -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 88377 | 0.73 | 0.368371 |
Target: 5'- cGGCcgcGGCAcCGCCaccGCCCUCCGUCGC-Cg -3' miRNA: 3'- -UCGu--UCGU-GCGG---UGGGAGGCGGCGaG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 170688 | 0.72 | 0.383919 |
Target: 5'- gAGCuggaaaucGCACGCCGCCCgcggcgcgaUUGCCGCUCc -3' miRNA: 3'- -UCGuu------CGUGCGGUGGGa--------GGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 86754 | 0.72 | 0.391854 |
Target: 5'- cGGCccuugAAGC-UGCCGCCC-CCGCCGCg- -3' miRNA: 3'- -UCG-----UUCGuGCGGUGGGaGGCGGCGag -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 164579 | 0.72 | 0.391854 |
Target: 5'- cGCuucGCGCuccagaGCCACCacggCCGCCGCUCg -3' miRNA: 3'- uCGuu-CGUG------CGGUGGga--GGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 36366 | 0.72 | 0.399896 |
Target: 5'- aGGCGAGUGCGUCGCUa-UCGUCGCUCu -3' miRNA: 3'- -UCGUUCGUGCGGUGGgaGGCGGCGAG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 198132 | 0.72 | 0.383919 |
Target: 5'- uGCGAGCugGUCAUCg-CCGCCGC-Ca -3' miRNA: 3'- uCGUUCGugCGGUGGgaGGCGGCGaG- -5' |
|||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 160677 | 0.72 | 0.391854 |
Target: 5'- cGCcgaGGGCAgGUUGCCCUCCGCCaGCUg -3' miRNA: 3'- uCG---UUCGUgCGGUGGGAGGCGG-CGAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home