miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 34355 1.09 0.001205
Target:  5'- cAGCAAGCACGCCACCCUCCGCCGCUCg -3'
miRNA:   3'- -UCGUUCGUGCGGUGGGAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 116585 0.79 0.144073
Target:  5'- gGGCAcGGCGgGCCcCCCggCCGCCGCUCu -3'
miRNA:   3'- -UCGU-UCGUgCGGuGGGa-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 32774 0.76 0.242267
Target:  5'- cGGCAcccuaucGGCACGCCACCCgcucaucguuucUCCGCgugaUGCUCg -3'
miRNA:   3'- -UCGU-------UCGUGCGGUGGG------------AGGCG----GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 101610 0.75 0.259993
Target:  5'- cGguGGCgGCGCCGCCgCcgCUGCCGCUCg -3'
miRNA:   3'- uCguUCG-UGCGGUGG-Ga-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 66390 0.75 0.265933
Target:  5'- cGCu-GC-CGCCGCCg-CCGCCGCUCg -3'
miRNA:   3'- uCGuuCGuGCGGUGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 167637 0.75 0.271981
Target:  5'- cGC-GGC-CGCCACCC-CCGCCGC-Ca -3'
miRNA:   3'- uCGuUCGuGCGGUGGGaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 162353 0.74 0.290791
Target:  5'- gGGCccGC-CGCCGCCg-CCGCCGCUCc -3'
miRNA:   3'- -UCGuuCGuGCGGUGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 110387 0.74 0.308577
Target:  5'- cGCAGGCcguucgaacACGCCACggccgacggcgucuCCUCCGCCGC-Cg -3'
miRNA:   3'- uCGUUCG---------UGCGGUG--------------GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 210165 0.74 0.308578
Target:  5'- gGGUcucuAGCACGCCAuucggcagcuucguCCCgacaCCGCCGCUCc -3'
miRNA:   3'- -UCGu---UCGUGCGGU--------------GGGa---GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 151386 0.73 0.338593
Target:  5'- uAGUcGGCACGUCGCCCUcgCCGaCCGCg- -3'
miRNA:   3'- -UCGuUCGUGCGGUGGGA--GGC-GGCGag -5'
15972 3' -61.6 NC_004065.1 + 104132 0.73 0.345871
Target:  5'- uGGCGAGCGgauccucguCGUCGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU---------GCGGUGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 159501 0.73 0.360761
Target:  5'- uGCAGGCGCGCCugCagCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUGCGGugG--GAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 88377 0.73 0.368371
Target:  5'- cGGCcgcGGCAcCGCCaccGCCCUCCGUCGC-Cg -3'
miRNA:   3'- -UCGu--UCGU-GCGG---UGGGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 75862 0.73 0.368371
Target:  5'- cAGCAacAGC-CGCCGCCg-CCGCCGC-Cg -3'
miRNA:   3'- -UCGU--UCGuGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 198132 0.72 0.383919
Target:  5'- uGCGAGCugGUCAUCg-CCGCCGC-Ca -3'
miRNA:   3'- uCGUUCGugCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 170688 0.72 0.383919
Target:  5'- gAGCuggaaaucGCACGCCGCCCgcggcgcgaUUGCCGCUCc -3'
miRNA:   3'- -UCGuu------CGUGCGGUGGGa--------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 164579 0.72 0.391854
Target:  5'- cGCuucGCGCuccagaGCCACCacggCCGCCGCUCg -3'
miRNA:   3'- uCGuu-CGUG------CGGUGGga--GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 86754 0.72 0.391854
Target:  5'- cGGCccuugAAGC-UGCCGCCC-CCGCCGCg- -3'
miRNA:   3'- -UCG-----UUCGuGCGGUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 160677 0.72 0.391854
Target:  5'- cGCcgaGGGCAgGUUGCCCUCCGCCaGCUg -3'
miRNA:   3'- uCG---UUCGUgCGGUGGGAGGCGG-CGAg -5'
15972 3' -61.6 NC_004065.1 + 36366 0.72 0.399896
Target:  5'- aGGCGAGUGCGUCGCUa-UCGUCGCUCu -3'
miRNA:   3'- -UCGUUCGUGCGGUGGgaGGCGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.