miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 91459 0.72 0.407223
Target:  5'- gAGCGgacGGCAcCGUCGCCgUcaguccgCCGCCGCUCg -3'
miRNA:   3'- -UCGU---UCGU-GCGGUGGgA-------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 168779 0.72 0.408042
Target:  5'- cGCAGGCcuucgACGCCuucCUCUCCGCC-CUCu -3'
miRNA:   3'- uCGUUCG-----UGCGGu--GGGAGGCGGcGAG- -5'
15972 3' -61.6 NC_004065.1 + 173305 0.72 0.416292
Target:  5'- cAGCugcuGC-CGCCGCCg-CCGCCGCUg -3'
miRNA:   3'- -UCGuu--CGuGCGGUGGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 171241 0.71 0.424642
Target:  5'- gAGCGGGUACGCCgugACCUUCCacGUCGcCUCu -3'
miRNA:   3'- -UCGUUCGUGCGG---UGGGAGG--CGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 45197 0.71 0.424642
Target:  5'- gGGCAA-CACGCCGCCg-CUGCCGC-Ca -3'
miRNA:   3'- -UCGUUcGUGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 62597 0.71 0.433091
Target:  5'- aGGUuAGCGcCGCCGCCC-CCGCCGg-- -3'
miRNA:   3'- -UCGuUCGU-GCGGUGGGaGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 167360 0.71 0.433091
Target:  5'- cAGaCAGGguCGCCGCUgccguCUCCGCCGC-Ca -3'
miRNA:   3'- -UC-GUUCguGCGGUGG-----GAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 94645 0.71 0.433091
Target:  5'- cGGCcGGCGCGUCACCgUCCcugaagaacucGCCGCg- -3'
miRNA:   3'- -UCGuUCGUGCGGUGGgAGG-----------CGGCGag -5'
15972 3' -61.6 NC_004065.1 + 146086 0.71 0.450279
Target:  5'- cGCAAcacGCACGCCuACaggaagCUCCGCCGCg- -3'
miRNA:   3'- uCGUU---CGUGCGG-UGg-----GAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 180946 0.71 0.459013
Target:  5'- -cCGAGCGCGCCGguaCCUCCuuGCCGgUCa -3'
miRNA:   3'- ucGUUCGUGCGGUg--GGAGG--CGGCgAG- -5'
15972 3' -61.6 NC_004065.1 + 141082 0.71 0.467836
Target:  5'- cGCGGGcCugGCCAgCUaCCGCCGCg- -3'
miRNA:   3'- uCGUUC-GugCGGUgGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 161473 0.7 0.476745
Target:  5'- gGGCcuucGGgACGCCGuCaCCUCCGCCGC-Cg -3'
miRNA:   3'- -UCGu---UCgUGCGGU-G-GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 72076 0.7 0.476745
Target:  5'- cAGCcGGUggACGCCACCCUgCGCgGCc- -3'
miRNA:   3'- -UCGuUCG--UGCGGUGGGAgGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 194456 0.7 0.49481
Target:  5'- aAGCGguugGGCACGgCGgCg-CCGCCGCUCa -3'
miRNA:   3'- -UCGU----UCGUGCgGUgGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 123021 0.7 0.503041
Target:  5'- cGGCGAGCgugacguccgacgGCGCUgcGCCUUCCGCucgggaggaccCGCUCg -3'
miRNA:   3'- -UCGUUCG-------------UGCGG--UGGGAGGCG-----------GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 108733 0.7 0.503959
Target:  5'- gGGC--GCGCGUCGCCCUCaCGCgGgUCu -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAG-GCGgCgAG- -5'
15972 3' -61.6 NC_004065.1 + 119837 0.7 0.513181
Target:  5'- gGGCGgcGGCGCGUCGCgg-CCGCCGCa- -3'
miRNA:   3'- -UCGU--UCGUGCGGUGggaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 109801 0.7 0.52247
Target:  5'- cGCGGGCACGUucgacgagaaCGCCCUCguCGCCGUc- -3'
miRNA:   3'- uCGUUCGUGCG----------GUGGGAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 120179 0.7 0.522471
Target:  5'- cGGCAccuGCGCGaUgGCCCcCCGCCGCa- -3'
miRNA:   3'- -UCGUu--CGUGC-GgUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 137955 0.7 0.522471
Target:  5'- cGCAA-CGCGCgGCCCUCCGagCGCg- -3'
miRNA:   3'- uCGUUcGUGCGgUGGGAGGCg-GCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.