miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 93347 0.69 0.531824
Target:  5'- gAGCcGGCcCGCCgccggccagACCCgcCCGUCGCUCg -3'
miRNA:   3'- -UCGuUCGuGCGG---------UGGGa-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 201118 0.69 0.531824
Target:  5'- --gAGGCACGauguCCGCCUugUCCGCCGaCUCg -3'
miRNA:   3'- ucgUUCGUGC----GGUGGG--AGGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 127506 0.69 0.531824
Target:  5'- aGGC--GCGCGUCGUCCUCUGCCGCc- -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 205961 0.69 0.531825
Target:  5'- -uCGAGC-CGCuCAUgCUgCCGCCGCUCa -3'
miRNA:   3'- ucGUUCGuGCG-GUGgGA-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 130583 0.69 0.531825
Target:  5'- gGGCgAGGCGCGCgAUgucgaggcggCgUCUGCCGCUCg -3'
miRNA:   3'- -UCG-UUCGUGCGgUG----------GgAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 178792 0.69 0.535583
Target:  5'- cGC-GGCcaGCGCCAUCCagcagggauccauaCCGCCGCUCu -3'
miRNA:   3'- uCGuUCG--UGCGGUGGGa-------------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 125339 0.69 0.541238
Target:  5'- cAGCAccugcAGCGuCGCCucgugACCCUCCGgCGCg- -3'
miRNA:   3'- -UCGU-----UCGU-GCGG-----UGGGAGGCgGCGag -5'
15972 3' -61.6 NC_004065.1 + 151168 0.69 0.541238
Target:  5'- cGCGAGCugGCgCGCCggCCGCC-CUUc -3'
miRNA:   3'- uCGUUCGugCG-GUGGgaGGCGGcGAG- -5'
15972 3' -61.6 NC_004065.1 + 141293 0.69 0.541239
Target:  5'- -cCAAGCugGUggacgUGCUCaUCCGCCGCUCg -3'
miRNA:   3'- ucGUUCGugCG-----GUGGG-AGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 110712 0.69 0.541239
Target:  5'- gGGCGAGagcCGCCACCCUcgacCCGaagacCUGCUCg -3'
miRNA:   3'- -UCGUUCgu-GCGGUGGGA----GGC-----GGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 167924 0.69 0.541239
Target:  5'- cGCGAGCguaACGaCCGCCg-CUGCCGCUg -3'
miRNA:   3'- uCGUUCG---UGC-GGUGGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 154515 0.69 0.54502
Target:  5'- -cCAGGCACGCCaacgcuauucacugcGCCCUgauccucgCCGCCGCcaUCg -3'
miRNA:   3'- ucGUUCGUGCGG---------------UGGGA--------GGCGGCG--AG- -5'
15972 3' -61.6 NC_004065.1 + 63136 0.69 0.550707
Target:  5'- cAGCGAGCccaucaACGCCACCgUCgaacacaagUGCCGCg- -3'
miRNA:   3'- -UCGUUCG------UGCGGUGGgAG---------GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 52804 0.69 0.550707
Target:  5'- gAGCAgAGCGCGcCCGCCCUCgGCaaaaGUg- -3'
miRNA:   3'- -UCGU-UCGUGC-GGUGGGAGgCGg---CGag -5'
15972 3' -61.6 NC_004065.1 + 120770 0.69 0.557366
Target:  5'- cGCGAGUcgucaucgucaccgACGCCGCUaccgCCGCCGuCUCc -3'
miRNA:   3'- uCGUUCG--------------UGCGGUGGga--GGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 122681 0.69 0.560226
Target:  5'- uGGUGAGCACGUCuCCCUUCuCCcaGCUCa -3'
miRNA:   3'- -UCGUUCGUGCGGuGGGAGGcGG--CGAG- -5'
15972 3' -61.6 NC_004065.1 + 1599 0.69 0.560227
Target:  5'- cGCGGGUAUcgGCCACaaCCUUCGUCGCUg -3'
miRNA:   3'- uCGUUCGUG--CGGUG--GGAGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 124530 0.69 0.566916
Target:  5'- gGGCAcGUGCGCCACcagguggaacagcuCCUCgGCCGCc- -3'
miRNA:   3'- -UCGUuCGUGCGGUG--------------GGAGgCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 90166 0.69 0.56979
Target:  5'- cGCcGGCucCGCCG-CCUCCGCCGUc- -3'
miRNA:   3'- uCGuUCGu-GCGGUgGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 158532 0.69 0.56979
Target:  5'- uGCGAGCGCGaCCGgcgcaUCUCuCGCaCGCUCa -3'
miRNA:   3'- uCGUUCGUGC-GGUg----GGAG-GCG-GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.