Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15972 | 3' | -61.6 | NC_004065.1 | + | 54475 | 0.66 | 0.750816 |
Target: 5'- cGCGAGCGCacgcgcaGCCA-CCUCCGUCGa-- -3' miRNA: 3'- uCGUUCGUG-------CGGUgGGAGGCGGCgag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 102797 | 0.66 | 0.742549 |
Target: 5'- cGCcacCGCGCCcgAUCCUcgcggCCGCCGCUCc -3' miRNA: 3'- uCGuucGUGCGG--UGGGA-----GGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 228466 | 0.66 | 0.742549 |
Target: 5'- cGCAGGCACGCCgucagcuuacacACCa--CGUCGCg- -3' miRNA: 3'- uCGUUCGUGCGG------------UGGgagGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 28939 | 0.66 | 0.742549 |
Target: 5'- aGGaAAGC-CGCCG-CCUCCGUCGC-Cg -3' miRNA: 3'- -UCgUUCGuGCGGUgGGAGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 6926 | 0.66 | 0.742549 |
Target: 5'- uGCGGGCACgGCCucGgCgUCCGCCGUc- -3' miRNA: 3'- uCGUUCGUG-CGG--UgGgAGGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 33823 | 0.66 | 0.742549 |
Target: 5'- cGGaCAAGCugGCCAUCaaccaCGCCGUg- -3' miRNA: 3'- -UC-GUUCGugCGGUGGgag--GCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 89199 | 0.66 | 0.742548 |
Target: 5'- gAGCAGGCAguccggcuggaUGuCCACCa--CGUCGCUCu -3' miRNA: 3'- -UCGUUCGU-----------GC-GGUGGgagGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 133597 | 0.66 | 0.742548 |
Target: 5'- -cCAGGUAUauaaGuCCGCCgUgCCGCCGCUCg -3' miRNA: 3'- ucGUUCGUG----C-GGUGGgA-GGCGGCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 142410 | 0.66 | 0.733279 |
Target: 5'- cGCGGGCcaucuuuCGCCugCCggCgCGCCgGCUCc -3' miRNA: 3'- uCGUUCGu------GCGGugGGa-G-GCGG-CGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 209133 | 0.66 | 0.733279 |
Target: 5'- aAGCGAGCggauuccccaGCGCCGCgg-CCGUguCGCUCg -3' miRNA: 3'- -UCGUUCG----------UGCGGUGggaGGCG--GCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 135625 | 0.66 | 0.733279 |
Target: 5'- cGCGGGUcuacgGCGCCACCagCCGacaGCUCg -3' miRNA: 3'- uCGUUCG-----UGCGGUGGgaGGCgg-CGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 196755 | 0.66 | 0.733279 |
Target: 5'- cGGCGuGCuGCGCCugCCcaagaUCCGCCacCUCa -3' miRNA: 3'- -UCGUuCG-UGCGGugGG-----AGGCGGc-GAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 101430 | 0.66 | 0.733279 |
Target: 5'- cGGCuGGCGCGUgcggaUGCgCCUUCGCCGC-Cg -3' miRNA: 3'- -UCGuUCGUGCG-----GUG-GGAGGCGGCGaG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 87645 | 0.66 | 0.733279 |
Target: 5'- cGCGAacuGCGCGCCuucgacACCC-CCGaCCGCa- -3' miRNA: 3'- uCGUU---CGUGCGG------UGGGaGGC-GGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 29232 | 0.66 | 0.733279 |
Target: 5'- cGcCGAGaCGcCGUCGCCCgccaCCGCCGCg- -3' miRNA: 3'- uC-GUUC-GU-GCGGUGGGa---GGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 63289 | 0.66 | 0.723931 |
Target: 5'- cGGCGAGCuccCGCUGCCCaUCGa-GCUCa -3' miRNA: 3'- -UCGUUCGu--GCGGUGGGaGGCggCGAG- -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 115204 | 0.66 | 0.723931 |
Target: 5'- gAGUcGGCGCuCC-CUCUCUGCCGCg- -3' miRNA: 3'- -UCGuUCGUGcGGuGGGAGGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 90330 | 0.66 | 0.723931 |
Target: 5'- cGGCAAGCGCGUCcgcgaACUCgUCCGCguCGCg- -3' miRNA: 3'- -UCGUUCGUGCGG-----UGGG-AGGCG--GCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 115423 | 0.66 | 0.723931 |
Target: 5'- uAGCGAGgGCGauaCCAgCCCucguagggcacUCCGCCGCg- -3' miRNA: 3'- -UCGUUCgUGC---GGU-GGG-----------AGGCGGCGag -5' |
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15972 | 3' | -61.6 | NC_004065.1 | + | 127884 | 0.66 | 0.723931 |
Target: 5'- cGGuCGAGcCGgGUCugCCUCCGCaCGCa- -3' miRNA: 3'- -UC-GUUC-GUgCGGugGGAGGCG-GCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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