miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 163386 0.66 0.723931
Target:  5'- cAGCGucAGCGCGuCCGCCaCgcagCGCCGCa- -3'
miRNA:   3'- -UCGU--UCGUGC-GGUGG-Gag--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 181910 0.66 0.723931
Target:  5'- cGCGAGguC-CCACCg-CCGCCGC-Ca -3'
miRNA:   3'- uCGUUCguGcGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 86696 0.66 0.72393
Target:  5'- cGCccuGC-CGCCGCCC-CCGCCccCUCu -3'
miRNA:   3'- uCGuu-CGuGCGGUGGGaGGCGGc-GAG- -5'
15972 3' -61.6 NC_004065.1 + 191548 0.66 0.72393
Target:  5'- cAGCAAGgGCgGCuCACuCUUCCGCaCGCg- -3'
miRNA:   3'- -UCGUUCgUG-CG-GUG-GGAGGCG-GCGag -5'
15972 3' -61.6 NC_004065.1 + 225643 0.66 0.72393
Target:  5'- cAGCAcuccGGCuccCGCCGCCg-CCGUCGCg- -3'
miRNA:   3'- -UCGU----UCGu--GCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 163419 0.66 0.72393
Target:  5'- gAGCGucGGCaACGCCGCgguggCCGCCGC-Cg -3'
miRNA:   3'- -UCGU--UCG-UGCGGUGgga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 102532 0.66 0.714511
Target:  5'- cAGgGAGCugGacaaCGCUC-CCGCCGCg- -3'
miRNA:   3'- -UCgUUCGugCg---GUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 135317 0.66 0.714511
Target:  5'- cGGCccGCucgaGCCGCCCUCCaaggucagggGCCGCg- -3'
miRNA:   3'- -UCGuuCGug--CGGUGGGAGG----------CGGCGag -5'
15972 3' -61.6 NC_004065.1 + 103894 0.66 0.714511
Target:  5'- cGC-AGCACGCCgACCgcaUCCaGCagaGCUCg -3'
miRNA:   3'- uCGuUCGUGCGG-UGGg--AGG-CGg--CGAG- -5'
15972 3' -61.6 NC_004065.1 + 45521 0.66 0.714511
Target:  5'- cGGacGGUcuACGCCACCCggCGCCGCg- -3'
miRNA:   3'- -UCguUCG--UGCGGUGGGagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 4423 0.66 0.714511
Target:  5'- cGGCGGGCcugACGCUgACCCUCgGgCCucgaGCUCg -3'
miRNA:   3'- -UCGUUCG---UGCGG-UGGGAGgC-GG----CGAG- -5'
15972 3' -61.6 NC_004065.1 + 98964 0.66 0.714511
Target:  5'- uGCAAGUuaaagaccGCGCCGCUCUUaguaucccggCGCCGC-Ca -3'
miRNA:   3'- uCGUUCG--------UGCGGUGGGAG----------GCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 92040 0.66 0.714511
Target:  5'- gGGCucuuGGCGCGCUcgagGCaUCUCaCGCgCGCUCg -3'
miRNA:   3'- -UCGu---UCGUGCGG----UG-GGAG-GCG-GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 102358 0.66 0.713565
Target:  5'- uGCAacaacgugaacauGGUccCGCCGCCCUCggCGCCGCa- -3'
miRNA:   3'- uCGU-------------UCGu-GCGGUGGGAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 229362 0.66 0.712619
Target:  5'- cAGCGAGCgggugcucgcuacGCGCggccggacgcacuCACCCacaUCCGCCGCc- -3'
miRNA:   3'- -UCGUUCG-------------UGCG-------------GUGGG---AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 109631 0.67 0.705028
Target:  5'- cGGCGaaggAGCAgCGuCCGCCCgaUCCGCCGg-- -3'
miRNA:   3'- -UCGU----UCGU-GC-GGUGGG--AGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 67688 0.67 0.705028
Target:  5'- cGGCGGGCcCuCCAUCUcuucuUCCGCCGcCUCu -3'
miRNA:   3'- -UCGUUCGuGcGGUGGG-----AGGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 66764 0.67 0.705028
Target:  5'- cGCGAGgagGCGCCGgCg-CCGCCGCUg -3'
miRNA:   3'- uCGUUCg--UGCGGUgGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 177228 0.67 0.705028
Target:  5'- gGGCGGGCGCGCUcuGCUCgCCuCUGCUUu -3'
miRNA:   3'- -UCGUUCGUGCGG--UGGGaGGcGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 128464 0.67 0.703124
Target:  5'- cGCGGGCGCGaucaggcuaccaCugCCagCGCCGCUg -3'
miRNA:   3'- uCGUUCGUGCg-----------GugGGagGCGGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.