miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 163841 0.67 0.69549
Target:  5'- cAGCGaguAGCACGUCGCgCaguguUCCGCgaacCGCUCg -3'
miRNA:   3'- -UCGU---UCGUGCGGUGgG-----AGGCG----GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 182681 0.67 0.69549
Target:  5'- uGGCAccucucauGUugGCCAUCCguugccccCCGCCGCg- -3'
miRNA:   3'- -UCGUu-------CGugCGGUGGGa-------GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 151790 0.67 0.695489
Target:  5'- cGGCAuGgACGUC-CUCUCCG-CGCUCa -3'
miRNA:   3'- -UCGUuCgUGCGGuGGGAGGCgGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 136780 0.67 0.695489
Target:  5'- cGGUcGGCACGUCGauCCCaCCGgCCGCUUc -3'
miRNA:   3'- -UCGuUCGUGCGGU--GGGaGGC-GGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 96973 0.67 0.685903
Target:  5'- cGCcuGCuGCGCCgGCCgUCCGUCGCg- -3'
miRNA:   3'- uCGuuCG-UGCGG-UGGgAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 86894 0.67 0.685903
Target:  5'- cGCAGGUcgcgGCGCCggucucGCCCUCgGCgGCg- -3'
miRNA:   3'- uCGUUCG----UGCGG------UGGGAGgCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 172093 0.67 0.685903
Target:  5'- gAGCGGGggacguaGCGCgGCuCCUCCGCaGCUUa -3'
miRNA:   3'- -UCGUUCg------UGCGgUG-GGAGGCGgCGAG- -5'
15972 3' -61.6 NC_004065.1 + 158333 0.67 0.685903
Target:  5'- gAG-AGGaCGCGCCGCUCccguugccgCCGCCGCUg -3'
miRNA:   3'- -UCgUUC-GUGCGGUGGGa--------GGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 68169 0.67 0.685903
Target:  5'- cGGCGGcGCGCGCgACggagcugucggCC-CCGCCGCUg -3'
miRNA:   3'- -UCGUU-CGUGCGgUG-----------GGaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 102881 0.67 0.676277
Target:  5'- gGGCGAucGC-CGCCGCCgguagcgCCGCCGC-Cg -3'
miRNA:   3'- -UCGUU--CGuGCGGUGGga-----GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 98997 0.67 0.676277
Target:  5'- -aCAGGguCGCCcacACgUUCCGCCGCUg -3'
miRNA:   3'- ucGUUCguGCGG---UGgGAGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 100872 0.67 0.676277
Target:  5'- aGGCu-GCGCcCCAgguaguucUCCUCCGCCGCg- -3'
miRNA:   3'- -UCGuuCGUGcGGU--------GGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 117898 0.67 0.676277
Target:  5'- gGGUAGGgACGUCAUCUUCUGCUgGCUg -3'
miRNA:   3'- -UCGUUCgUGCGGUGGGAGGCGG-CGAg -5'
15972 3' -61.6 NC_004065.1 + 149231 0.67 0.676277
Target:  5'- cGCu-GC-CGCCGCCg-CCGCCGCcgUCg -3'
miRNA:   3'- uCGuuCGuGCGGUGGgaGGCGGCG--AG- -5'
15972 3' -61.6 NC_004065.1 + 78899 0.67 0.676277
Target:  5'- cGGCGuuGC-CGCCGCCUUC-GCUGCUg -3'
miRNA:   3'- -UCGUu-CGuGCGGUGGGAGgCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 163644 0.67 0.676277
Target:  5'- cAGCGAGCGCaGCCGCUCgacgaucagCgGCCgguguuGCUCa -3'
miRNA:   3'- -UCGUUCGUG-CGGUGGGa--------GgCGG------CGAG- -5'
15972 3' -61.6 NC_004065.1 + 46659 0.67 0.676277
Target:  5'- cGGCGAGCGCGCUcugcucgauACUCUacaCCGCCuacaCUCa -3'
miRNA:   3'- -UCGUUCGUGCGG---------UGGGA---GGCGGc---GAG- -5'
15972 3' -61.6 NC_004065.1 + 67842 0.67 0.676277
Target:  5'- cAGCAgaagGGCACGgCGaagaCCUgCGCCGCa- -3'
miRNA:   3'- -UCGU----UCGUGCgGUg---GGAgGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 185491 0.67 0.675313
Target:  5'- aGGCAGcGC-CGCCACCgUCCccgguaacaucgcGCCGC-Cg -3'
miRNA:   3'- -UCGUU-CGuGCGGUGGgAGG-------------CGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 200042 0.67 0.675313
Target:  5'- uGGCGAuaccacuGC-CGCCGCCg-CCGCCGC-Ca -3'
miRNA:   3'- -UCGUU-------CGuGCGGUGGgaGGCGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.