miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 765 0.67 0.656934
Target:  5'- cGCGGGUucGCGCuCGaccuucgagcguUCCUCCGCUGUUCg -3'
miRNA:   3'- uCGUUCG--UGCG-GU------------GGGAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 1030 0.68 0.598697
Target:  5'- cGCuccGCGCGCU-CCCU-CGCCGUUCg -3'
miRNA:   3'- uCGuu-CGUGCGGuGGGAgGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 1599 0.69 0.560227
Target:  5'- cGCGGGUAUcgGCCACaaCCUUCGUCGCUg -3'
miRNA:   3'- uCGUUCGUG--CGGUG--GGAGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 4423 0.66 0.714511
Target:  5'- cGGCGGGCcugACGCUgACCCUCgGgCCucgaGCUCg -3'
miRNA:   3'- -UCGUUCG---UGCGG-UGGGAGgC-GG----CGAG- -5'
15972 3' -61.6 NC_004065.1 + 4629 0.68 0.589031
Target:  5'- gAGgGAGCggcaccaucaGCGCCagcGCCC-CCGCCGCg- -3'
miRNA:   3'- -UCgUUCG----------UGCGG---UGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 6253 0.68 0.637519
Target:  5'- cGGCAAGCAgcuCGCgGCCgUCCGCaucccCGCg- -3'
miRNA:   3'- -UCGUUCGU---GCGgUGGgAGGCG-----GCGag -5'
15972 3' -61.6 NC_004065.1 + 6926 0.66 0.742549
Target:  5'- uGCGGGCACgGCCucGgCgUCCGCCGUc- -3'
miRNA:   3'- uCGUUCGUG-CGG--UgGgAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 22046 0.67 0.666618
Target:  5'- gGGCAGGC-CGCgGuauCCCUCCgGUCGgUCg -3'
miRNA:   3'- -UCGUUCGuGCGgU---GGGAGG-CGGCgAG- -5'
15972 3' -61.6 NC_004065.1 + 24589 0.66 0.760818
Target:  5'- cGCGuGUcguCGCCGCCaccgCCGCCGC-Cg -3'
miRNA:   3'- uCGUuCGu--GCGGUGGga--GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 25466 0.68 0.589031
Target:  5'- gAGCAGaCGCGCagCACCUcCCGCCGCcCg -3'
miRNA:   3'- -UCGUUcGUGCG--GUGGGaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 28823 0.68 0.626831
Target:  5'- cGCAcGUcgccGCGCCGCCCgagCCgggacgcGCCGCUUg -3'
miRNA:   3'- uCGUuCG----UGCGGUGGGa--GG-------CGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 28939 0.66 0.742549
Target:  5'- aGGaAAGC-CGCCG-CCUCCGUCGC-Cg -3'
miRNA:   3'- -UCgUUCGuGCGGUgGGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 29232 0.66 0.733279
Target:  5'- cGcCGAGaCGcCGUCGCCCgccaCCGCCGCg- -3'
miRNA:   3'- uC-GUUC-GU-GCGGUGGGa---GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 31116 0.68 0.608385
Target:  5'- gGGCAGGCAccacCGUCACCguCUCCGucuCCGaCUCg -3'
miRNA:   3'- -UCGUUCGU----GCGGUGG--GAGGC---GGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 32774 0.76 0.242267
Target:  5'- cGGCAcccuaucGGCACGCCACCCgcucaucguuucUCCGCgugaUGCUCg -3'
miRNA:   3'- -UCGU-------UCGUGCGGUGGG------------AGGCG----GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 33823 0.66 0.742549
Target:  5'- cGGaCAAGCugGCCAUCaaccaCGCCGUg- -3'
miRNA:   3'- -UC-GUUCGugCGGUGGgag--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 34355 1.09 0.001205
Target:  5'- cAGCAAGCACGCCACCCUCCGCCGCUCg -3'
miRNA:   3'- -UCGUUCGUGCGGUGGGAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 36366 0.72 0.399896
Target:  5'- aGGCGAGUGCGUCGCUa-UCGUCGCUCu -3'
miRNA:   3'- -UCGUUCGUGCGGUGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 41284 0.68 0.618089
Target:  5'- uGGUggGCuuCGCCGCCgUgCGCCuGCUa -3'
miRNA:   3'- -UCGuuCGu-GCGGUGGgAgGCGG-CGAg -5'
15972 3' -61.6 NC_004065.1 + 42607 0.67 0.666618
Target:  5'- gAGCGcgcuggGGUGCGCuCGCCCUCgacgccacaccgCGCCGCg- -3'
miRNA:   3'- -UCGU------UCGUGCG-GUGGGAG------------GCGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.