miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 43335 0.66 0.751731
Target:  5'- cGGCGGGgACGCC-CCacgCGCCGCg- -3'
miRNA:   3'- -UCGUUCgUGCGGuGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 45197 0.71 0.424642
Target:  5'- gGGCAA-CACGCCGCCg-CUGCCGC-Ca -3'
miRNA:   3'- -UCGUUcGUGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 45521 0.66 0.714511
Target:  5'- cGGacGGUcuACGCCACCCggCGCCGCg- -3'
miRNA:   3'- -UCguUCG--UGCGGUGGGagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 46659 0.67 0.676277
Target:  5'- cGGCGAGCGCGCUcugcucgauACUCUacaCCGCCuacaCUCa -3'
miRNA:   3'- -UCGUUCGUGCGG---------UGGGA---GGCGGc---GAG- -5'
15972 3' -61.6 NC_004065.1 + 50332 0.66 0.751731
Target:  5'- uGguGGCACGCgugGCCa-CCGCCGCg- -3'
miRNA:   3'- uCguUCGUGCGg--UGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 52804 0.69 0.550707
Target:  5'- gAGCAgAGCGCGcCCGCCCUCgGCaaaaGUg- -3'
miRNA:   3'- -UCGU-UCGUGC-GGUGGGAGgCGg---CGag -5'
15972 3' -61.6 NC_004065.1 + 54093 0.67 0.656934
Target:  5'- gAGCcaGAGCcauauACGCCGCCgUCauCGCCGCg- -3'
miRNA:   3'- -UCG--UUCG-----UGCGGUGGgAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 54475 0.66 0.750816
Target:  5'- cGCGAGCGCacgcgcaGCCA-CCUCCGUCGa-- -3'
miRNA:   3'- uCGUUCGUG-------CGGUgGGAGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 59659 0.66 0.751731
Target:  5'- cGGUcucgGAGCACGCCACCUcgUCCucGUCGUcCg -3'
miRNA:   3'- -UCG----UUCGUGCGGUGGG--AGG--CGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 61084 0.68 0.608385
Target:  5'- uGUcGGCGCGCUGCUCUgCGUCGCg- -3'
miRNA:   3'- uCGuUCGUGCGGUGGGAgGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 61464 0.69 0.579394
Target:  5'- cGCccGCuguCGCCGCCg-CCGCCGCUg -3'
miRNA:   3'- uCGuuCGu--GCGGUGGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 62597 0.71 0.433091
Target:  5'- aGGUuAGCGcCGCCGCCC-CCGCCGg-- -3'
miRNA:   3'- -UCGuUCGU-GCGGUGGGaGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 62670 0.66 0.760818
Target:  5'- cGGC-AGCG-GCgACCCUgucugCCGCCGCg- -3'
miRNA:   3'- -UCGuUCGUgCGgUGGGA-----GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 63136 0.69 0.550707
Target:  5'- cAGCGAGCccaucaACGCCACCgUCgaacacaagUGCCGCg- -3'
miRNA:   3'- -UCGUUCG------UGCGGUGGgAG---------GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 63289 0.66 0.723931
Target:  5'- cGGCGAGCuccCGCUGCCCaUCGa-GCUCa -3'
miRNA:   3'- -UCGUUCGu--GCGGUGGGaGGCggCGAG- -5'
15972 3' -61.6 NC_004065.1 + 65377 0.68 0.598697
Target:  5'- gGGCGAcGCGCGCCGCgacccgacuguuCCUCCGagGCUg -3'
miRNA:   3'- -UCGUU-CGUGCGGUG------------GGAGGCggCGAg -5'
15972 3' -61.6 NC_004065.1 + 66390 0.75 0.265933
Target:  5'- cGCu-GC-CGCCGCCg-CCGCCGCUCg -3'
miRNA:   3'- uCGuuCGuGCGGUGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 66764 0.67 0.705028
Target:  5'- cGCGAGgagGCGCCGgCg-CCGCCGCUg -3'
miRNA:   3'- uCGUUCg--UGCGGUgGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 67688 0.67 0.705028
Target:  5'- cGGCGGGCcCuCCAUCUcuucuUCCGCCGcCUCu -3'
miRNA:   3'- -UCGUUCGuGcGGUGGG-----AGGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 67842 0.67 0.676277
Target:  5'- cAGCAgaagGGCACGgCGaagaCCUgCGCCGCa- -3'
miRNA:   3'- -UCGU----UCGUGCgGUg---GGAgGCGGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.