miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 68169 0.67 0.685903
Target:  5'- cGGCGGcGCGCGCgACggagcugucggCC-CCGCCGCUg -3'
miRNA:   3'- -UCGUU-CGUGCGgUG-----------GGaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 72076 0.7 0.476745
Target:  5'- cAGCcGGUggACGCCACCCUgCGCgGCc- -3'
miRNA:   3'- -UCGuUCG--UGCGGUGGGAgGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 73692 0.66 0.751731
Target:  5'- uGCugcuGC-CGCCGCuuccuccuCCUCCGCCGCn- -3'
miRNA:   3'- uCGuu--CGuGCGGUG--------GGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 73725 0.68 0.627803
Target:  5'- cGCu-GCugGCGCCACUgCUgCCGCCGCUa -3'
miRNA:   3'- uCGuuCG--UGCGGUGG-GA-GGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 74444 0.69 0.579393
Target:  5'- uGGCcucGAGCACGCCGUCCUCgGCguagCGCUg -3'
miRNA:   3'- -UCG---UUCGUGCGGUGGGAGgCG----GCGAg -5'
15972 3' -61.6 NC_004065.1 + 75862 0.73 0.368371
Target:  5'- cAGCAacAGC-CGCCGCCg-CCGCCGC-Cg -3'
miRNA:   3'- -UCGU--UCGuGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 78861 0.68 0.637519
Target:  5'- cGGCcGGCGCGCCAgCUCgcggUCGCCGacgaUCa -3'
miRNA:   3'- -UCGuUCGUGCGGU-GGGa---GGCGGCg---AG- -5'
15972 3' -61.6 NC_004065.1 + 78899 0.67 0.676277
Target:  5'- cGGCGuuGC-CGCCGCCUUC-GCUGCUg -3'
miRNA:   3'- -UCGUu-CGuGCGGUGGGAGgCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 80318 0.68 0.637519
Target:  5'- gGGCcGGCGCgGCCgcgGCCCcCCGgCGUUCg -3'
miRNA:   3'- -UCGuUCGUG-CGG---UGGGaGGCgGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 80974 0.67 0.656934
Target:  5'- cGGCcuGC-CGCCGCCgUCguCGCcCGCUCc -3'
miRNA:   3'- -UCGuuCGuGCGGUGGgAG--GCG-GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 86696 0.66 0.72393
Target:  5'- cGCccuGC-CGCCGCCC-CCGCCccCUCu -3'
miRNA:   3'- uCGuu-CGuGCGGUGGGaGGCGGc-GAG- -5'
15972 3' -61.6 NC_004065.1 + 86754 0.72 0.391854
Target:  5'- cGGCccuugAAGC-UGCCGCCC-CCGCCGCg- -3'
miRNA:   3'- -UCG-----UUCGuGCGGUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 86894 0.67 0.685903
Target:  5'- cGCAGGUcgcgGCGCCggucucGCCCUCgGCgGCg- -3'
miRNA:   3'- uCGUUCG----UGCGG------UGGGAGgCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 87416 0.66 0.759914
Target:  5'- cGCAcuGCAUGCCgaagcgcACCgCUUCGCUGCUg -3'
miRNA:   3'- uCGUu-CGUGCGG-------UGG-GAGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 87645 0.66 0.733279
Target:  5'- cGCGAacuGCGCGCCuucgacACCC-CCGaCCGCa- -3'
miRNA:   3'- uCGUU---CGUGCGG------UGGGaGGC-GGCGag -5'
15972 3' -61.6 NC_004065.1 + 88377 0.73 0.368371
Target:  5'- cGGCcgcGGCAcCGCCaccGCCCUCCGUCGC-Cg -3'
miRNA:   3'- -UCGu--UCGU-GCGG---UGGGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 89199 0.66 0.742548
Target:  5'- gAGCAGGCAguccggcuggaUGuCCACCa--CGUCGCUCu -3'
miRNA:   3'- -UCGUUCGU-----------GC-GGUGGgagGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 90166 0.69 0.56979
Target:  5'- cGCcGGCucCGCCG-CCUCCGCCGUc- -3'
miRNA:   3'- uCGuUCGu-GCGGUgGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 90330 0.66 0.723931
Target:  5'- cGGCAAGCGCGUCcgcgaACUCgUCCGCguCGCg- -3'
miRNA:   3'- -UCGUUCGUGCGG-----UGGG-AGGCG--GCGag -5'
15972 3' -61.6 NC_004065.1 + 91459 0.72 0.407223
Target:  5'- gAGCGgacGGCAcCGUCGCCgUcaguccgCCGCCGCUCg -3'
miRNA:   3'- -UCGU---UCGU-GCGGUGGgA-------GGCGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.