miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 229362 0.66 0.712619
Target:  5'- cAGCGAGCgggugcucgcuacGCGCggccggacgcacuCACCCacaUCCGCCGCc- -3'
miRNA:   3'- -UCGUUCG-------------UGCG-------------GUGGG---AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 228466 0.66 0.742549
Target:  5'- cGCAGGCACGCCgucagcuuacacACCa--CGUCGCg- -3'
miRNA:   3'- uCGUUCGUGCGG------------UGGgagGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 228085 0.68 0.627803
Target:  5'- cGGgGGGCAC-CUACCuCUuucgguggcCCGCCGCUCc -3'
miRNA:   3'- -UCgUUCGUGcGGUGG-GA---------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 225643 0.66 0.72393
Target:  5'- cAGCAcuccGGCuccCGCCGCCg-CCGUCGCg- -3'
miRNA:   3'- -UCGU----UCGu--GCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 223387 0.67 0.656934
Target:  5'- uAGCu-GCGCGUCuccCCCUCCgacaGCCGCg- -3'
miRNA:   3'- -UCGuuCGUGCGGu--GGGAGG----CGGCGag -5'
15972 3' -61.6 NC_004065.1 + 210165 0.74 0.308578
Target:  5'- gGGUcucuAGCACGCCAuucggcagcuucguCCCgacaCCGCCGCUCc -3'
miRNA:   3'- -UCGu---UCGUGCGGU--------------GGGa---GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 209133 0.66 0.733279
Target:  5'- aAGCGAGCggauuccccaGCGCCGCgg-CCGUguCGCUCg -3'
miRNA:   3'- -UCGUUCG----------UGCGGUGggaGGCG--GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 205961 0.69 0.531825
Target:  5'- -uCGAGC-CGCuCAUgCUgCCGCCGCUCa -3'
miRNA:   3'- ucGUUCGuGCG-GUGgGA-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 205724 0.66 0.751731
Target:  5'- uGCcGGUGCGUCGCCCcaucaUCUGUCGCg- -3'
miRNA:   3'- uCGuUCGUGCGGUGGG-----AGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 205293 0.69 0.579394
Target:  5'- -aCGAGUGCGCCAgaCU-CGCCGCUCu -3'
miRNA:   3'- ucGUUCGUGCGGUggGAgGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 204472 0.66 0.751731
Target:  5'- aGGCGcggGGCcgACGCCgacGCCgUCUGUCGCUUu -3'
miRNA:   3'- -UCGU---UCG--UGCGG---UGGgAGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 202510 0.66 0.751731
Target:  5'- uGgAGGCACGCCGCgaugaaucuggCgUCCuGaCCGCUCa -3'
miRNA:   3'- uCgUUCGUGCGGUG-----------GgAGG-C-GGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 201118 0.69 0.531824
Target:  5'- --gAGGCACGauguCCGCCUugUCCGCCGaCUCg -3'
miRNA:   3'- ucgUUCGUGC----GGUGGG--AGGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 201023 0.68 0.627803
Target:  5'- cGCGuGCGCGCgGCgCCUcgccaCCGCCGC-Cg -3'
miRNA:   3'- uCGUuCGUGCGgUG-GGA-----GGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 200042 0.67 0.675313
Target:  5'- uGGCGAuaccacuGC-CGCCGCCg-CCGCCGC-Ca -3'
miRNA:   3'- -UCGUU-------CGuGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 198132 0.72 0.383919
Target:  5'- uGCGAGCugGUCAUCg-CCGCCGC-Ca -3'
miRNA:   3'- uCGUUCGugCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 197914 0.66 0.751731
Target:  5'- cGGCGGGCACGUagUCCUCauCGUCGgUCg -3'
miRNA:   3'- -UCGUUCGUGCGguGGGAG--GCGGCgAG- -5'
15972 3' -61.6 NC_004065.1 + 197668 0.68 0.637519
Target:  5'- cGUAGGgAcccuCGCCguACCgaCCGCCGCUCg -3'
miRNA:   3'- uCGUUCgU----GCGG--UGGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 197050 0.68 0.589031
Target:  5'- cGCgAGGCcucCGUCAUgCUCCGCCGCg- -3'
miRNA:   3'- uCG-UUCGu--GCGGUGgGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 196755 0.66 0.733279
Target:  5'- cGGCGuGCuGCGCCugCCcaagaUCCGCCacCUCa -3'
miRNA:   3'- -UCGUuCG-UGCGGugGG-----AGGCGGc-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.