miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 195408 0.68 0.598697
Target:  5'- cGGCGAGCcguacACGUaCGCUC-CCGCCGCgUCg -3'
miRNA:   3'- -UCGUUCG-----UGCG-GUGGGaGGCGGCG-AG- -5'
15972 3' -61.6 NC_004065.1 + 194456 0.7 0.49481
Target:  5'- aAGCGguugGGCACGgCGgCg-CCGCCGCUCa -3'
miRNA:   3'- -UCGU----UCGUGCgGUgGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 191548 0.66 0.72393
Target:  5'- cAGCAAGgGCgGCuCACuCUUCCGCaCGCg- -3'
miRNA:   3'- -UCGUUCgUG-CG-GUG-GGAGGCG-GCGag -5'
15972 3' -61.6 NC_004065.1 + 185491 0.67 0.675313
Target:  5'- aGGCAGcGC-CGCCACCgUCCccgguaacaucgcGCCGC-Cg -3'
miRNA:   3'- -UCGUU-CGuGCGGUGGgAGG-------------CGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 184483 0.68 0.647232
Target:  5'- gGGC-GGC-UGCCGCCg-CCGCCGCg- -3'
miRNA:   3'- -UCGuUCGuGCGGUGGgaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 182863 0.66 0.760819
Target:  5'- aGGUgcGCccguuuCGCCACgCCUUCGCCcacgaGCUCg -3'
miRNA:   3'- -UCGuuCGu-----GCGGUG-GGAGGCGG-----CGAG- -5'
15972 3' -61.6 NC_004065.1 + 182681 0.67 0.69549
Target:  5'- uGGCAccucucauGUugGCCAUCCguugccccCCGCCGCg- -3'
miRNA:   3'- -UCGUu-------CGugCGGUGGGa-------GGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 181910 0.66 0.723931
Target:  5'- cGCGAGguC-CCACCg-CCGCCGC-Ca -3'
miRNA:   3'- uCGUUCguGcGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 180946 0.71 0.459013
Target:  5'- -cCGAGCGCGCCGguaCCUCCuuGCCGgUCa -3'
miRNA:   3'- ucGUUCGUGCGGUg--GGAGG--CGGCgAG- -5'
15972 3' -61.6 NC_004065.1 + 178792 0.69 0.535583
Target:  5'- cGC-GGCcaGCGCCAUCCagcagggauccauaCCGCCGCUCu -3'
miRNA:   3'- uCGuUCG--UGCGGUGGGa-------------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 177228 0.67 0.705028
Target:  5'- gGGCGGGCGCGCUcuGCUCgCCuCUGCUUu -3'
miRNA:   3'- -UCGUUCGUGCGG--UGGGaGGcGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 173305 0.72 0.416292
Target:  5'- cAGCugcuGC-CGCCGCCg-CCGCCGCUg -3'
miRNA:   3'- -UCGuu--CGuGCGGUGGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 172093 0.67 0.685903
Target:  5'- gAGCGGGggacguaGCGCgGCuCCUCCGCaGCUUa -3'
miRNA:   3'- -UCGUUCg------UGCGgUG-GGAGGCGgCGAG- -5'
15972 3' -61.6 NC_004065.1 + 171241 0.71 0.424642
Target:  5'- gAGCGGGUACGCCgugACCUUCCacGUCGcCUCu -3'
miRNA:   3'- -UCGUUCGUGCGG---UGGGAGG--CGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 170688 0.72 0.383919
Target:  5'- gAGCuggaaaucGCACGCCGCCCgcggcgcgaUUGCCGCUCc -3'
miRNA:   3'- -UCGuu------CGUGCGGUGGGa--------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 168779 0.72 0.408042
Target:  5'- cGCAGGCcuucgACGCCuucCUCUCCGCC-CUCu -3'
miRNA:   3'- uCGUUCG-----UGCGGu--GGGAGGCGGcGAG- -5'
15972 3' -61.6 NC_004065.1 + 167924 0.69 0.541239
Target:  5'- cGCGAGCguaACGaCCGCCg-CUGCCGCUg -3'
miRNA:   3'- uCGUUCG---UGC-GGUGGgaGGCGGCGAg -5'
15972 3' -61.6 NC_004065.1 + 167637 0.75 0.271981
Target:  5'- cGC-GGC-CGCCACCC-CCGCCGC-Ca -3'
miRNA:   3'- uCGuUCGuGCGGUGGGaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 167360 0.71 0.433091
Target:  5'- cAGaCAGGguCGCCGCUgccguCUCCGCCGC-Ca -3'
miRNA:   3'- -UC-GUUCguGCGGUGG-----GAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 167157 0.68 0.637519
Target:  5'- aGGCcAGCAgacCGCCACCa-CCGCUGC-Cg -3'
miRNA:   3'- -UCGuUCGU---GCGGUGGgaGGCGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.