miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 127506 0.69 0.531824
Target:  5'- aGGC--GCGCGUCGUCCUCUGCCGCc- -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 146086 0.71 0.450279
Target:  5'- cGCAAcacGCACGCCuACaggaagCUCCGCCGCg- -3'
miRNA:   3'- uCGUU---CGUGCGG-UGg-----GAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 141082 0.71 0.467836
Target:  5'- cGCGGGcCugGCCAgCUaCCGCCGCg- -3'
miRNA:   3'- uCGUUC-GugCGGUgGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 72076 0.7 0.476745
Target:  5'- cAGCcGGUggACGCCACCCUgCGCgGCc- -3'
miRNA:   3'- -UCGuUCG--UGCGGUGGGAgGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 161473 0.7 0.476745
Target:  5'- gGGCcuucGGgACGCCGuCaCCUCCGCCGC-Cg -3'
miRNA:   3'- -UCGu---UCgUGCGGU-G-GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 194456 0.7 0.49481
Target:  5'- aAGCGguugGGCACGgCGgCg-CCGCCGCUCa -3'
miRNA:   3'- -UCGU----UCGUGCgGUgGgaGGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 123021 0.7 0.503041
Target:  5'- cGGCGAGCgugacguccgacgGCGCUgcGCCUUCCGCucgggaggaccCGCUCg -3'
miRNA:   3'- -UCGUUCG-------------UGCGG--UGGGAGGCG-----------GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 108733 0.7 0.503959
Target:  5'- gGGC--GCGCGUCGCCCUCaCGCgGgUCu -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAG-GCGgCgAG- -5'
15972 3' -61.6 NC_004065.1 + 109801 0.7 0.52247
Target:  5'- cGCGGGCACGUucgacgagaaCGCCCUCguCGCCGUc- -3'
miRNA:   3'- uCGUUCGUGCG----------GUGGGAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 62597 0.71 0.433091
Target:  5'- aGGUuAGCGcCGCCGCCC-CCGCCGg-- -3'
miRNA:   3'- -UCGuUCGU-GCGGUGGGaGGCGGCgag -5'
15972 3' -61.6 NC_004065.1 + 171241 0.71 0.424642
Target:  5'- gAGCGGGUACGCCgugACCUUCCacGUCGcCUCu -3'
miRNA:   3'- -UCGUUCGUGCGG---UGGGAGG--CGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 45197 0.71 0.424642
Target:  5'- gGGCAA-CACGCCGCCg-CUGCCGC-Ca -3'
miRNA:   3'- -UCGUUcGUGCGGUGGgaGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 110387 0.74 0.308577
Target:  5'- cGCAGGCcguucgaacACGCCACggccgacggcgucuCCUCCGCCGC-Cg -3'
miRNA:   3'- uCGUUCG---------UGCGGUG--------------GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 151386 0.73 0.338593
Target:  5'- uAGUcGGCACGUCGCCCUcgCCGaCCGCg- -3'
miRNA:   3'- -UCGuUCGUGCGGUGGGA--GGC-GGCGag -5'
15972 3' -61.6 NC_004065.1 + 104132 0.73 0.345871
Target:  5'- uGGCGAGCGgauccucguCGUCGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU---------GCGGUGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 88377 0.73 0.368371
Target:  5'- cGGCcgcGGCAcCGCCaccGCCCUCCGUCGC-Cg -3'
miRNA:   3'- -UCGu--UCGU-GCGG---UGGGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 170688 0.72 0.383919
Target:  5'- gAGCuggaaaucGCACGCCGCCCgcggcgcgaUUGCCGCUCc -3'
miRNA:   3'- -UCGuu------CGUGCGGUGGGa--------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 86754 0.72 0.391854
Target:  5'- cGGCccuugAAGC-UGCCGCCC-CCGCCGCg- -3'
miRNA:   3'- -UCG-----UUCGuGCGGUGGGaGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 164579 0.72 0.391854
Target:  5'- cGCuucGCGCuccagaGCCACCacggCCGCCGCUCg -3'
miRNA:   3'- uCGuu-CGUG------CGGUGGga--GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 36366 0.72 0.399896
Target:  5'- aGGCGAGUGCGUCGCUa-UCGUCGCUCu -3'
miRNA:   3'- -UCGUUCGUGCGGUGGgaGGCGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.