miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15972 3' -61.6 NC_004065.1 + 170688 0.72 0.383919
Target:  5'- gAGCuggaaaucGCACGCCGCCCgcggcgcgaUUGCCGCUCc -3'
miRNA:   3'- -UCGuu------CGUGCGGUGGGa--------GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 88377 0.73 0.368371
Target:  5'- cGGCcgcGGCAcCGCCaccGCCCUCCGUCGC-Cg -3'
miRNA:   3'- -UCGu--UCGU-GCGG---UGGGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 104132 0.73 0.345871
Target:  5'- uGGCGAGCGgauccucguCGUCGCCUUCCGCgGCg- -3'
miRNA:   3'- -UCGUUCGU---------GCGGUGGGAGGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 151386 0.73 0.338593
Target:  5'- uAGUcGGCACGUCGCCCUcgCCGaCCGCg- -3'
miRNA:   3'- -UCGuUCGUGCGGUGGGA--GGC-GGCGag -5'
15972 3' -61.6 NC_004065.1 + 110387 0.74 0.308577
Target:  5'- cGCAGGCcguucgaacACGCCACggccgacggcgucuCCUCCGCCGC-Cg -3'
miRNA:   3'- uCGUUCG---------UGCGGUG--------------GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 72076 0.7 0.476745
Target:  5'- cAGCcGGUggACGCCACCCUgCGCgGCc- -3'
miRNA:   3'- -UCGuUCG--UGCGGUGGGAgGCGgCGag -5'
15972 3' -61.6 NC_004065.1 + 161473 0.7 0.476745
Target:  5'- gGGCcuucGGgACGCCGuCaCCUCCGCCGC-Cg -3'
miRNA:   3'- -UCGu---UCgUGCGGU-G-GGAGGCGGCGaG- -5'
15972 3' -61.6 NC_004065.1 + 120388 0.69 0.56979
Target:  5'- cGGCGgaucgGGCggACGCUGCuCCUUCGCCGCg- -3'
miRNA:   3'- -UCGU-----UCG--UGCGGUG-GGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 124530 0.69 0.566916
Target:  5'- gGGCAcGUGCGCCACcagguggaacagcuCCUCgGCCGCc- -3'
miRNA:   3'- -UCGUuCGUGCGGUG--------------GGAGgCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 122681 0.69 0.560226
Target:  5'- uGGUGAGCACGUCuCCCUUCuCCcaGCUCa -3'
miRNA:   3'- -UCGUUCGUGCGGuGGGAGGcGG--CGAG- -5'
15972 3' -61.6 NC_004065.1 + 52804 0.69 0.550707
Target:  5'- gAGCAgAGCGCGcCCGCCCUCgGCaaaaGUg- -3'
miRNA:   3'- -UCGU-UCGUGC-GGUGGGAGgCGg---CGag -5'
15972 3' -61.6 NC_004065.1 + 151168 0.69 0.541238
Target:  5'- cGCGAGCugGCgCGCCggCCGCC-CUUc -3'
miRNA:   3'- uCGUUCGugCG-GUGGgaGGCGGcGAG- -5'
15972 3' -61.6 NC_004065.1 + 125339 0.69 0.541238
Target:  5'- cAGCAccugcAGCGuCGCCucgugACCCUCCGgCGCg- -3'
miRNA:   3'- -UCGU-----UCGU-GCGG-----UGGGAGGCgGCGag -5'
15972 3' -61.6 NC_004065.1 + 93347 0.69 0.531824
Target:  5'- gAGCcGGCcCGCCgccggccagACCCgcCCGUCGCUCg -3'
miRNA:   3'- -UCGuUCGuGCGG---------UGGGa-GGCGGCGAG- -5'
15972 3' -61.6 NC_004065.1 + 201118 0.69 0.531824
Target:  5'- --gAGGCACGauguCCGCCUugUCCGCCGaCUCg -3'
miRNA:   3'- ucgUUCGUGC----GGUGGG--AGGCGGC-GAG- -5'
15972 3' -61.6 NC_004065.1 + 127506 0.69 0.531824
Target:  5'- aGGC--GCGCGUCGUCCUCUGCCGCc- -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAGGCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 109801 0.7 0.52247
Target:  5'- cGCGGGCACGUucgacgagaaCGCCCUCguCGCCGUc- -3'
miRNA:   3'- uCGUUCGUGCG----------GUGGGAG--GCGGCGag -5'
15972 3' -61.6 NC_004065.1 + 108733 0.7 0.503959
Target:  5'- gGGC--GCGCGUCGCCCUCaCGCgGgUCu -3'
miRNA:   3'- -UCGuuCGUGCGGUGGGAG-GCGgCgAG- -5'
15972 3' -61.6 NC_004065.1 + 123021 0.7 0.503041
Target:  5'- cGGCGAGCgugacguccgacgGCGCUgcGCCUUCCGCucgggaggaccCGCUCg -3'
miRNA:   3'- -UCGUUCG-------------UGCGG--UGGGAGGCG-----------GCGAG- -5'
15972 3' -61.6 NC_004065.1 + 194456 0.7 0.49481
Target:  5'- aAGCGguugGGCACGgCGgCg-CCGCCGCUCa -3'
miRNA:   3'- -UCGU----UCGUGCgGUgGgaGGCGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.